Bacillus bombysepticus: CY96_00865
Help
Entry
CY96_00865 CDS
T03597
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bby
Bacillus bombysepticus
Pathway
bby03030
DNA replication
bby03410
Base excision repair
bby03420
Nucleotide excision repair
bby03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CY96_00865 (ligA)
03410 Base excision repair
CY96_00865 (ligA)
03420 Nucleotide excision repair
CY96_00865 (ligA)
03430 Mismatch repair
CY96_00865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bby03032
]
CY96_00865 (ligA)
03400 DNA repair and recombination proteins [BR:
bby03400
]
CY96_00865 (ligA)
Enzymes [BR:
bby01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CY96_00865 (ligA)
DNA replication proteins [BR:
bby03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CY96_00865 (ligA)
DNA repair and recombination proteins [BR:
bby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CY96_00865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CY96_00865 (ligA)
MMR (mismatch excision repair)
DNA ligase
CY96_00865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CY96_00865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_3
DUF5395
Motif
Other DBs
NCBI-ProteinID:
AHX16643
UniProt:
A0A9W3L5W6
LinkDB
All DBs
Position
171128..173137
Genome browser
AA seq
669 aa
AA seq
DB search
MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP
SVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVRQGIDGANVRYICELKIDGL
AVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEVTLEARGEAYMPKRSFV
KLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTISSHSESL
DFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTT
AKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDL
IREKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRMPTHCPACESELVRLEEEVA
LRCINPTCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYALTKEQLLQ
LERFGEKSATNLIQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEE
ELKAINEIGEKMAQSVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKT
VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNE
ERFLQELNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagagatagtaaaaaaacgtatagaagaattacgtgacttgttaaatacattt
aactatcaatatcacgtattagacaatccttctgtttctgatgcggaatatgaccgtaat
atgcaggagcttataaaattagaagcagagaacccagagtttatgagtgaagattctccc
tccgttcgcgttggggggactgttcttgatatatttgaaaaagtaacacataagtcacca
atgttaagtttaggaaatgcatttaacgaaggagatttacgtgatttcgacagaagagta
cgtcaaggaattgatggtgcgaatgtaagatatatatgtgaattaaaaattgacgggctt
gccgtttcgcttcattatgaaaaaggacgcttcattcaaggggcgacacgtggtgatggt
gtaacgggtgaagatattactcaaaatttaaaaacgattaaagctatcccacttcgttta
aatgaagaagtaacgttagaagcaagaggcgaagcttatatgccgaagcgttcattcgtt
aaactaaatgaagaaaaagagcaaaatggagaagatgtatttgcgaatccgcgtaatgca
gcagctggttcaatacgtcaacttgatccgaaaattgcagcgaagcgtaacttatctatg
tttgtgtatggtcttgcgaatgtagaagaaaaaacaatttcatcacatagtgaatcgctg
gatttcttaggtgaactcggatttaagacaaatccaaatcgccgtacatgtgaaacaatt
gaagaagttatagcttatgtagaagaatggcaagaaaaacgtccgcatcttgattatgag
attgatggaatcgttataaaagtagatgatgttgctcttcaagaaagtctaggaactaca
gcgaagagtccaaggtgggcgattgcttataaatttccggctgaagaagttgtaacgaga
ttaacaggcattgaattaagtgttggccgaacaggggttgtaacaccgactgcagaacta
gagccagtgagagttgctggtacgattgttcgtcgtgcttctttacataacgaagattta
attcgtgaaaaagacattcgaattggtgactacgttgttgtgaagaaggctggagatatt
attcctgaagttgtgaacgttatttttgataagcgtactggtgaggaagaagaataccgc
atgccaactcattgtccagcatgtgagagtgaacttgttcgtttagaagaagaagtagca
cttcgttgtataaatccaacttgtcctgctcaaattcgagagggattaatccatttcgtt
tcaagaaatgcgatgaatattgatggacttggagaacgtgtcattacacaactctttgat
gctgattacattcgtacatttgctgatttatatgcattgacgaaagagcaattattacag
ttagaacgttttggtgaaaaatcagcaacaaacttaatacaagcaattgaaaattctaaa
gaaaactcgttagagcgattattatttggtcttggaattcgccacgttggagcgaaagca
gcacgtacatttgcagagcactttgaaacgatggatgagcttgtaaaagcaacggaagaa
gaactaaaagcaattaatgaaattggcgaaaaaatggctcaatctgttgtgacatatttt
gataatgaagatgtattagagttattacagcagtttaaagagtatggcgtgaatatgaca
tacaaaggtataaaaattgcagatttacaaaatgttgaatcttacttcgcaggaaaaacg
gttgttttaacaggtaagctagaagttatgggacgaagtgaagcgaagaagaagattgag
gcattaggtggaaaagtaacaggaagtgttagtaagagtacggatttagttgttgcaggt
gaagcagctggttcgaaattagcacaagcggagaaacataatgttgaggtttggaatgaa
gagaggttcttacaagagctaaataagtaa
DBGET
integrated database retrieval system
