Bergeyella cardium: DBX24_07410
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Entry
DBX24_07410 CDS
T06387
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcad
Bergeyella cardium
Pathway
bcad03030
DNA replication
bcad03410
Base excision repair
bcad03420
Nucleotide excision repair
bcad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DBX24_07410 (ligA)
03410 Base excision repair
DBX24_07410 (ligA)
03420 Nucleotide excision repair
DBX24_07410 (ligA)
03430 Mismatch repair
DBX24_07410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcad03032
]
DBX24_07410 (ligA)
03400 DNA repair and recombination proteins [BR:
bcad03400
]
DBX24_07410 (ligA)
Enzymes [BR:
bcad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DBX24_07410 (ligA)
DNA replication proteins [BR:
bcad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DBX24_07410 (ligA)
DNA repair and recombination proteins [BR:
bcad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DBX24_07410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DBX24_07410 (ligA)
MMR (mismatch excision repair)
DNA ligase
DBX24_07410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DBX24_07410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_3
RNA_lig_T4_1
Auto_anti-p27
DUF2797
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QHN65720
UniProt:
A0A6P1QYD4
LinkDB
All DBs
Position
1607689..1609689
Genome browser
AA seq
666 aa
AA seq
DB search
MDIKQRIEQLAEELHQHNYNYYILDEPTISDFEFDSKLKELQELEQQYPEFSTPNSPTQR
VGGGITRNFPTVQHQYRMYSLDNSYDFDDLKNWKNRLEKAIDEPITFVAELKYDGASISI
TYENGKLTQAVTRGDGIQGDEITANVRTISDIPLVLRGDFPQKFHIRGEIYLTKKNFEKL
NESRREEGLDLFMNPRNTASGSLKIQDSAEVRRRNLSAVLYQYIAEEFPAKTHWELLAKA
KEWGFKVSEDQAKLCRNLDEIKEFINYWDKERHHLPFEIDGIVIKVNSLKHQQLLGYTAK
SPRWAMAYKFKAEKVETELLSVDYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDIIK
KLDLHNDDFVYVEKGGEIIPKIVGVNTEKRSLLQQPLSYIKNCPECGTPLIKIPTQAVHF
CPNEMHCPPQVIGKMIHFVSRKALNIENLGEETIELLYRHQLVENPADFYTLTKEQLLPL
ERMAEKSAQNIIDAIQKSKEVPFEKVLFGLGIKHIGETVAKKLVKTFPNIDALRTASFDE
LIQVEDVGDKIAESLIRFFKNAENLLLVERLKSYGVQMEKQESTTETLSNVLKGKTFLFT
GKLSLFTREQAEDMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQAIGTIRILDEQEF
LNLISQ
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatattaagcaacgaatagagcagctagccgaggaacttcatcagcataattacaac
tattatattttggatgagcctacgatttccgactttgaatttgattccaagttgaaggaa
ttacaagagcttgagcagcaatatcctgaattttcaacacccaattcgcccacacagagg
gtaggagggggcattactcgcaattttcctacagtccagcaccagtataggatgtattct
ctggataattcatacgattttgatgaccttaaaaactggaagaatcgccttgaaaaagcg
atagatgagcccattacatttgtagcagagctgaaatacgatggtgcctctatctccatt
acctatgaaaatggaaaactcacccaagccgttaccagaggagatggtattcagggagat
gagattacagcaaatgttcgtactatatctgatattcctcttgtattaaggggtgatttc
cctcaaaaattccatattcgtggagagatttatcttacaaaaaagaactttgaaaagctc
aatgaaagccggcgagaagaaggtttggacttgtttatgaacccgagaaatactgccagt
ggaagtcttaaaatacaagattctgcagaggttcgcaggcgcaatctctcagctgtactc
tatcagtatatcgcggaagaatttcctgcaaagactcactgggagcttctggcaaaggct
aaggaatggggctttaaagtttcagaagatcaggcaaagctctgtagaaatttagatgaa
ataaaggagtttatcaattattgggataaagaaaggcatcatctcccttttgaaatagat
ggtattgtcattaaggttaattctcttaaacatcagcagctactcggctatacagcaaag
tctcctcgctgggctatggcgtataaattcaaagccgaaaaggtagaaaccgagctcctt
agtgtagattaccaagtggggcgtacgggtgccataacccctgtggcaaatctaaaaccc
gttctactggcggggactatcgtgaaacgagcctctttgcacaatgaggatattatcaag
aaactggatttgcataatgatgactttgtctatgtagagaaaggtggggagattatcccc
aaaatagtgggggtaaatacagaaaagcgaagcctcctccagcagccattgagctatata
aaaaactgtccagagtgcggtacacctcttattaagatacctacccaagcagtacacttc
tgcccaaacgaaatgcactgcccaccgcaggtcatcggaaaaatgatacatttcgtctct
cgaaaagcactcaatattgagaatctcggtgaagaaaccatagagctcctctaccgtcat
cagctggtagagaaccctgccgatttctacacccttaccaaagagcaactgctcccactc
gagagaatggcagagaaatccgcacaaaacatcatagatgcaatacaaaaatctaaggaa
gttcccttcgagaaagttctctttgggcttggtataaagcatatcggggagaccgtagcc
aaaaaactcgtaaaaactttccccaatatagatgcactgagaaccgcttcttttgatgaa
ctcatacaggtagaagatgtaggcgataaaattgccgaaagtctgatacgcttctttaaa
aacgctgaaaatctcctactcgtagagcgactaaagtcctatggcgtgcagatggagaag
caagagagcaccactgaaactcttagcaatgtcctcaagggtaaaacttttctttttacg
ggaaagctcagtctatttacccgcgagcaagccgaagatatggtagaaaagcacggcgga
aagaatatctctgcagtgtctaaaaatctcaactatctcgtagtaggagagaaggctggt
agcaaactcaaaaaagcccaagctatagggactattaggattttagatgagcaggaattc
ctcaatttaatttcccaatag
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integrated database retrieval system
