Borreliella californiensis: QIA17_03275
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Entry
QIA17_03275 CDS
T09333
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcaf
Borreliella californiensis
Pathway
bcaf03030
DNA replication
bcaf03410
Base excision repair
bcaf03420
Nucleotide excision repair
bcaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QIA17_03275 (ligA)
03410 Base excision repair
QIA17_03275 (ligA)
03420 Nucleotide excision repair
QIA17_03275 (ligA)
03430 Mismatch repair
QIA17_03275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcaf03032
]
QIA17_03275 (ligA)
03400 DNA repair and recombination proteins [BR:
bcaf03400
]
QIA17_03275 (ligA)
Enzymes [BR:
bcaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QIA17_03275 (ligA)
DNA replication proteins [BR:
bcaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QIA17_03275 (ligA)
DNA repair and recombination proteins [BR:
bcaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QIA17_03275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QIA17_03275 (ligA)
MMR (mismatch excision repair)
DNA ligase
QIA17_03275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QIA17_03275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH_5
HHH_2
ELYS-bb
DUF4796_N
GerPB
Motif
Other DBs
NCBI-ProteinID:
WKC91822
LinkDB
All DBs
Position
561540..563522
Genome browser
AA seq
660 aa
AA seq
DB search
MSIKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLKELENKYPEYKTLDSPT
LKFGSDLLNDFKEVEHSAPILSLDKVYDLNLLKSWIDKIDFNNSFNVSVEPKIDGCSIVL
YYKDGILEKALTRGNGKFGNDVTKNIRTIRYIPLFLDEKVDLVLRGEVYITKENFLKINK
SLEKPYTNSRNLASGILRRIDSREVANFPLNIFIYDFLNAGMEFKTNDLATARLKKLGFK
VNPLIRFFDQKSSIGEVLDYIADITKKRDSFEYEIDGVVLKVSDFVLRERLGYTTHHPKW
AMAYKFEALSGVSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSATLHNQDYIVSIGL
NVGDVVKVSRRGDVIPAVEMVINKFSSGFFKVPNNCPACKTVVVKEGAHFFCTNNNCPSI
AVERIKYFCSKNCMDIEGFSDKIISFLFEKKFISSEIDLYTFDFYKLLEFKGFKDRKINN
LINSIQSSKKKPFSKLLLSMGIKDLGENTIRLLFLNNLNSFSKLFKLCQDKDLAFSTLLK
IKGIGEKIALNIIGAFNDSIMLNKFKFFENLEFKMEELITIDDENKLLVGKRFCITGTFN
GYSRSIVIDKLKNKGAIFNTCVTRSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcaaagtacagcaagaaattgcagatttgaagaagttgattagaaagtgggat
aaagagtattatgtcgattctttgcctagtgttgaagattttgtatatgataagcatatt
ttaagacttaaagagctagaaaataagtatcccgaatataagaccttagattctcctact
cttaaatttggcagcgatcttttaaatgactttaaagaggttgaacattctgctcctata
ttaagtcttgataaggtttatgatcttaatttgctaaaatcatggatagataagattgat
tttaataattcttttaatgtttctgttgagccaaagattgatggatgctctattgttctt
tattataaggatggtattcttgaaaaagctcttactaggggtaatggaaaatttggtaat
gacgttactaaaaacattagaactattaggtatatccctttatttcttgatgaaaaggtt
gatttagtattaaggggtgaggtttatattactaaagaaaattttttaaaaataaataaa
tctttagaaaagccttatactaattctagaaatttggcttcgggaatacttagaaggatt
gatagtagagaggttgctaattttcctttaaatattttcatttatgattttttgaatgct
ggaatggagtttaaaaccaatgatttagctactgcaagacttaagaaattggggtttaaa
gtaaatcctctgattaggttttttgatcaaaaaagttcaattggagaagttttagattat
atagcagatataacaaaaaaaagagattcttttgaatatgaaatagatggcgttgttctt
aaggttagtgattttgttttgagagaaagattggggtatactacgcatcatcctaaatgg
gcaatggcctacaaatttgaagcgctttcaggtgttagtagggtcaatagcattgttgtt
caggttggacgtagtggtaaaattactccggttgcaaatattgataaagtttttgtttcg
ggggcttttattactagcgcaacattacacaatcaagattatatagtgtctattggtttg
aatgttggcgatgttgttaaagtttcaagaagaggagatgtaattcctgctgttgaaatg
gtgataaataaattttcctcaggatttttcaaagtccctaataattgtccggcttgcaaa
accgttgtagtaaaagagggggcacattttttttgtacaaataataattgtccttcaata
gcagtcgagaggataaaatatttttgtagtaaaaattgtatggatattgaagggttttcc
gacaagataatttcttttctttttgagaaaaaatttatttcttcagaaattgacctttat
acatttgatttttataaacttcttgaatttaaagggtttaaagatagaaagataaataat
ttgataaattcaattcaatctagtaaaaaaaagccatttagcaaattgcttcttagcatg
ggaattaaagatttaggagaaaacacaataaggttattattccttaataatttaaattcg
ttttcaaagctttttaagctttgccaagataaagatcttgccttttcaacattgttgaaa
attaaaggcataggagaaaaaattgctttaaatattattggagcttttaatgattcaata
atgcttaataagtttaaattttttgaaaatttggaatttaaaatggaagagcttattacg
attgatgatgagaataaattattagtcggtaaaaggttttgcattactggaacttttaat
ggttattccaggtctattgttattgacaagctgaaaaataaaggagcaatttttaacact
tgtgtgactaggagtttagattttcttattgtaggagaaaaagctggatcaaagcttaaa
aaagctttgagtttaaatataaaaattatgtcttttgaggacataaaaagttatttagat
tag
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