Bradyrhizobium canariense: BcanWSM471_28990
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Entry
BcanWSM471_28990 CDS
T08760
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcan
Bradyrhizobium canariense
Pathway
bcan03030
DNA replication
bcan03410
Base excision repair
bcan03420
Nucleotide excision repair
bcan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BcanWSM471_28990 (ligA)
03410 Base excision repair
BcanWSM471_28990 (ligA)
03420 Nucleotide excision repair
BcanWSM471_28990 (ligA)
03430 Mismatch repair
BcanWSM471_28990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcan03032
]
BcanWSM471_28990 (ligA)
03400 DNA repair and recombination proteins [BR:
bcan03400
]
BcanWSM471_28990 (ligA)
Enzymes [BR:
bcan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BcanWSM471_28990 (ligA)
DNA replication proteins [BR:
bcan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BcanWSM471_28990 (ligA)
DNA repair and recombination proteins [BR:
bcan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BcanWSM471_28990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BcanWSM471_28990 (ligA)
MMR (mismatch excision repair)
DNA ligase
BcanWSM471_28990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BcanWSM471_28990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Bep_C_terminal
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
UFW40218
LinkDB
All DBs
Position
complement(6176765..6178918)
Genome browser
AA seq
717 aa
AA seq
DB search
MTRAAKSKSTPLRDVAGLTKAQAKVEHMRLALEIEGHNERYYQDDAPTVTDAEYDALRQR
FNAIEKRFPEFVSADSPSQKVGAAPSGRFKKVRHAVPMLSLDNAFAEEDLRDFVGRIVRF
LKLDDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAVGEDVTANIRTLEDVPQKLK
GRNVPDICEVRGEVYMTKKAFLALNERQKAEGSTIFANPRNSAAGSLRQKDPTITASRPL
GFFAYAWGEMSAMPEGTQSGMIGWFERCGFKTNPLTKLCHSVEELLAFHHAIEEQRAKLD
YDIDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERATTVLRDIEIQVGRTGSFTPVG
KLEPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDV
VLDKRPKAAREFQFPKKCPCPLHTDVVRGETAAGEEEARARCTGEFACPYQKIEHLKLFV
SRRAFDIDGLGEKQLQYFFDEGFVKEPADIFTLEKRNSKLKLEDIEGYGATSVRNLFSAI
ESRRKIALERFIYALGMRHIGETTALALARGYGSWDAFHDASLKVAKGDEEAMAEMDALD
QIGETVIKSIADYFGESHNRGIVERLTREVEIIDAEKPKSNSAVAGKTVVFTGSLEKMTR
DEAKATAERLGAKVSGSVSKKTDFVVAGPGAGSKLAEANKHGVKVLTEDEWLQLIGE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgacaagagcagcaaaatcgaaatcaacaccgcttcgcgacgttgccggcctcaccaag
gcgcaggccaaggtcgagcacatgcggctcgcgctcgagatcgaggggcacaacgagcgc
tactaccaggacgacgcgcccaccgtcaccgacgccgagtatgacgcgctgcgccagcgc
ttcaacgcgatcgagaagcgttttccggaattcgtcagtgcagactctccgtcgcagaaa
gtcggtgctgcaccgtcgggccgcttcaagaaggtgcggcatgccgttcccatgctgtcg
ctcgacaacgcctttgcggaagaggatctgcgcgacttcgtcggtcgtatcgtgcgcttc
ctgaagctcgacgacgacaagatcgatttctccgccgagccgaagatcgacggcctctcg
atgtcgctgcgctacgagggcggtgaactcgtcaccgcggcgactcgcggcgacggcgcg
gtcggcgaggacgtcaccgccaacatccgcacgctcgaggacgtgccgcagaagctgaag
ggccgcaacgtccccgacatctgcgaggtgcgcggcgaggtctacatgaccaagaaggcc
ttcctggcgctcaacgagcggcagaaggcggagggcagcaccatcttcgccaatccgcgc
aactcggccgcgggctcgctccggcagaaggatccgaccatcaccgcctcgcgccccctc
ggcttcttcgcctatgcctggggtgagatgagcgcgatgccggagggcacgcagagcggc
atgatcggttggttcgagcgctgcggcttcaagaccaacccgctgaccaagctctgtcac
tccgtcgaggagctgctggcgtttcatcacgcgatcgaggagcagcgcgcaaagctcgac
tacgacatcgacggcgtcgtctacaaggtcgatcgcatcgactggcaggaacggctcggc
ttcgtctcgcgcacgccgcgctggggtattgcccacaaatttccggccgagcgcgccacg
acggtgctgcgcgacatcgagatccaggtcggccgtaccggctccttcacgccggtgggc
aagctcgaaccggtcggcgtcggcggcgtgatcgtgcagaacgtcacgctgcacaacgag
gactacatcaagggcatcggcaacaagggcgaggtgctgcgcgagggccgcgacatcagg
atcggcgacaccgtcgtgatccagcgcgccggcgacgtcatcccgcaggtggtcgacgtc
gttctcgacaagcggccgaaggctgccagggaattccagtttccgaagaagtgcccgtgc
ccgctgcataccgacgtcgtgcgaggagagacggccgctggcgaagaggaagcacgcgcc
cgttgtaccggcgagttcgcctgcccctatcagaagatcgagcacctgaagctgttcgtg
tcgcggcgcgccttcgacatcgacggcctgggcgagaagcagctccagtacttcttcgac
gagggttttgtgaaggagccagccgacatcttcacgctggaaaagcgcaattcgaagctc
aagctcgaggacatcgagggttacggcgcaacttcggtgcgcaatttgttcagcgcgatc
gagagccgtcgcaagattgcactggagcgctttatctacgcgctcggcatgcgccatatc
ggcgagaccacggcgctggcgctggcgcgcggctacggctcctgggacgccttccacgac
gccagcctgaaggtcgccaagggcgacgaggaggcgatggccgagatggatgcgctcgac
cagatcggcgagaccgtgatcaagagcatcgccgattatttcggcgagagccacaatcgc
ggcatcgtcgagcggctcaccagggaagtcgagatcatcgacgccgagaagccgaagagc
aactccgcagtcgccggcaagaccgtggtgttcacgggctcgctggagaagatgacgcgc
gacgaggccaaggccaccgctgagcggctaggcgcaaaagtgtccggatcggtgtccaag
aaaaccgatttcgtcgtcgccggccccggcgcgggctcgaagctcgcggaagccaacaag
catggcgtcaaggtgctgaccgaggacgagtggttgcagctgatcggggagtga
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integrated database retrieval system
