Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_1062
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Entry
BBCT_1062 CDS
T03931
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03030
DNA replication
bcat03410
Base excision repair
bcat03420
Nucleotide excision repair
bcat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBCT_1062
03410 Base excision repair
BBCT_1062
03420 Nucleotide excision repair
BBCT_1062
03430 Mismatch repair
BBCT_1062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcat03032
]
BBCT_1062
03400 DNA repair and recombination proteins [BR:
bcat03400
]
BBCT_1062
Enzymes [BR:
bcat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBCT_1062
DNA replication proteins [BR:
bcat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBCT_1062
DNA repair and recombination proteins [BR:
bcat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBCT_1062
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBCT_1062
MMR (mismatch excision repair)
DNA ligase
BBCT_1062
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBCT_1062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BAR02030
UniProt:
B6XUF1
LinkDB
All DBs
Position
complement(1241374..1244049)
Genome browser
AA seq
891 aa
AA seq
DB search
MTRHDDSEQLAWDFDASETDGGAAGTSTPVAADGGVASYAPGSERWIAALQATDADAMRL
DRLDVSSMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLQALEAQFPS
LDSTQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSLEELREWYDSVIRGLDWSDTKPLP
MTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEF
VEIRGEVFMRWDDFNTLNRESEDAGRAPFANPRNAAAGSLRQKDPRITSTRRLSFYAHGI
GTLQWGAKRGDGHDIVNNQSEAYELYKKWGIPVSPHNREVTTFSQILDMIDYYGEHRGDI
EHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPV
AILKPVYVAGSTVSRTTLHNPFEVERKGVLIGDTVVVRKAGDVIPELVGPVLERREGRED
QLRRFVMPSQCPSCGAQLAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGD
QSAIALTNPEEDRPDSVAIYAPNITEIVVAPGQEPEPYEPMEGLELPARQTPVLSSEAGL
FSLTSSDLQDVRVWREAPIIEIHETVGKNGKPKKTRKRIGGSGLWHQVPAFWTTPTVARK
RKDEVDESAEYPGYDVPEDAMVVREETKVSRSGASSVQPVYIRPAENTRKMLDEIDKARH
ADLWRVLVALSIRRLGPPTARVIANTLGSLDAIERASVDELSQIDGIGPEIAESVVTWFA
SAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQTLEGKTVVVTGSLIDFSRDSAKEAIIS
RGGRASGSVSKKTDWVVIGENAGAKAAKAEELGVPMLNEDQFKILLENGTV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgacaaggcatgacgattccgaacagctcgcatgggattttgacgcttccgaaacggat
ggcggtgccgcgggcacgtcgacgcccgtggcggcagatgggggagtcgcctcatatgcg
ccgggaagcgaacggtggatcgccgcattgcaggcgactgatgcggacgccatgcgactg
gacaggcttgacgtttcgtcgatgagtgctgaagccgcggcgcgattgtgggcgcgagtg
gcagcatgggtggaatccgatcagattgcatactatatcgatgatgcgccggtttcgtct
gatgcggcctacgatgcgagaatgcgctgcctacaggctttggaggcgcagtttccatcc
ctcgactctacgcaatcgccgacgcatcgtgttgggggcaccttctccaacgatttcgca
tcggtgcgtcacccgtcacgcatgatgagtcttgacgatgtcttttcgcttgaggaatta
cgcgaatggtatgacagtgtcatccgaggccttgattggtcggatacgaagccgctgcca
atgacctgcgaagtgaagattgatgggcttgcgctcaatctcatctatcgtaatggcgtg
cttgaacagggtctgaccagaggcgacggtgtgactggcgaagatatcacactcaatgtg
cgcaccatctccaccattccgcagaatcttgccggaccagaggaggatattcctgaattt
gtggagatccgcggtgaggttttcatgcgatgggatgatttcaacacgctcaacagggaa
agcgaggatgcgggacgcgcgcctttcgctaatccgcgcaacgcggccgcaggaagcctg
cgtcagaaagacccgcgcatcacctccaccagaaggcttagtttctacgcgcacggtatc
ggcacgctccaatggggtgccaaacgcggcgacggacacgatatcgtcaacaaccaatcc
gaggcgtacgagctatacaagaagtggggcataccggtctctccgcacaaccgtgaagtc
accacattcagccaaatcctcgacatgatcgactactacggcgagcatcgcggtgacatc
gagcatgcgctcgacggcatcgtcgtgaaagtggacgatctggggttgcagcggtcgctg
ggcgcgacctcgcgtgcgccacgttgggccatcgcctacaagtatccgcccgaggaagtc
aacacggagttgctcgacatcaccgtgcaagtggggcgtaccggccgcgtgacgccggta
gccattctgaagcccgtatatgttgcgggttcaacggtatcgagaaccactttgcacaat
ccgttcgaggtggaacgtaagggcgtgcttatcggcgacaccgttgtggtgcgcaaggca
ggcgatgtgattcccgaacttgtaggtccagtattggaacgtagggaaggacgtgaggac
cagctgcgccgtttcgtgatgccttcgcagtgcccgagctgtggggcacaactcgctcca
gccaaagagggggacaaggacatccgctgcccgaacgtggagtcctgcccggcacagtta
accgaacgcatcatcaacctggcgtccagaaaggcgttcgatatcgaacatctgggtgac
caatcggccatcgcgttgacgaatccggaagaggatcgccccgattcggtggcgatctac
gcgccgaacatcacggaaatcgtggtggcaccggggcaggagccagaaccgtacgagccg
atggaagggctggaactgccggcccggcaaacgccggtgttgtccagcgaggccggtctg
ttctcgctgacatcctccgatttgcaggatgttcgcgtatggcgagaagcgccaatcatc
gaaatccacgaaaccgtcggcaagaacggtaaaccgaaaaaaacacgcaaacgtatcggc
ggatcaggcctgtggcatcaggttccggcgttttggacgactccgacagtggcgagaaag
cgtaaggacgaagtcgatgaatccgcggaatatcccggatatgatgtgcctgaggatgcc
atggtggtccgagaggaaaccaaggtgtcgcgttccggagcatccagcgtgcagccggta
tatatacgtcccgcggaaaacacaaggaaaatgcttgacgaaattgacaaggcacgccac
gccgacttatggcgtgtgcttgtggccctgtccatcaggcgactcggtcctcctacggca
cgtgttatcgccaatacgctcggatcgcttgacgccatcgaacgcgccagtgtggacgaa
ctgtcacagatagacggcatcggtccggaaatcgcggaatcggtagtcacgtggttcgca
tcggccaaggaaccaggcgattggcgcggcacggtgttggaagcatggaaggctgctgga
gtcggtgcggagcaggttgaaatcagtacactaccgcagacgcttgaaggcaaaacagtg
gttgtcaccggttcgttgattgacttctcgcgtgactccgccaaagaagcgattatctcc
cgcggtggaagagcctcaggatccgtcagcaagaaaaccgattgggtggtcattggcgaa
aacgccggtgccaaagccgccaaagcagaggaattaggcgttcccatgctaaacgaggac
cagttcaaaatactgctggaaaatggaacggtgtga
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