Bacteroides cellulosilyticus: BcellWH2_05362
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Entry
BcellWH2_05362 CDS
T04116
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcel
Bacteroides cellulosilyticus
Pathway
bcel03030
DNA replication
bcel03410
Base excision repair
bcel03420
Nucleotide excision repair
bcel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BcellWH2_05362 (ligA)
03410 Base excision repair
BcellWH2_05362 (ligA)
03420 Nucleotide excision repair
BcellWH2_05362 (ligA)
03430 Mismatch repair
BcellWH2_05362 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcel03032
]
BcellWH2_05362 (ligA)
03400 DNA repair and recombination proteins [BR:
bcel03400
]
BcellWH2_05362 (ligA)
Enzymes [BR:
bcel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BcellWH2_05362 (ligA)
DNA replication proteins [BR:
bcel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BcellWH2_05362 (ligA)
DNA repair and recombination proteins [BR:
bcel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BcellWH2_05362 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BcellWH2_05362 (ligA)
MMR (mismatch excision repair)
DNA ligase
BcellWH2_05362 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BcellWH2_05362 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
Auto_anti-p27
DUF1266
Motif
Other DBs
NCBI-ProteinID:
ALJ62562
UniProt:
A0A0P0GMS4
LinkDB
All DBs
Position
complement(6872666..6874663)
Genome browser
AA seq
665 aa
AA seq
DB search
MTAKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEREHPEYQDETSPTMR
VGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRTQKALNEDFEICAELKYDGTSISL
TYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWEVFEEL
NREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYENLQKA
AQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNLGFTAKS
PRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNADIIEG
LDLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHCPECGSKLIRYEGEAAHY
CPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIKDTADLYKLTVDDIKNL
DRMGDKSAENIVKGIAQSKEVPFERALFALGIRFVGETVAKKIAKSFTDIEELENADLER
LINIDEIGEKIAQSIISYFANPLNRELIERLKIAGLQFSRKEEDLSGYTDKLVGQSIVIS
GVFTHHSRDEYKDLIEKNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEF
LALIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaagaaaagatagatcagctccgtgccgaactgcatcggcacaactacaat
tattacgtgttgaatgctcccgaaatctccgacaaagagttcgacgacatgatgcgggaa
ttgcaggatatggaacgagaacatcctgaatatcaggacgaaacttcgccaaccatgcgc
gtaggaagcgatttgaataagaatttcacgcaagtgacacacaaatatccaatgctttcg
ttgggtaatacctattccgaaggtgaggtatctgacttttatgatcgcactcaaaaagcc
ctgaacgaagattttgaaatctgtgccgaacttaaatatgacggtacttccatctcgctg
acatacgaaaacggcaaattaatacgtgccgtaacccgtggcgacggtgaaaaaggcgat
gatgtaacagataatgtgaagacaatccgtactatcccccttgttttgcatggtgattat
ccccaattatttgagatcagaggggaaatactaatgccgtgggaagtctttgaggaacta
aaccgcgaaaaagaggcacgcgaagaacctcttttcgctaatccgcgtaatgctgcatca
ggcactttgaaattacaaaactctgctatagttgcttcccgcaaactggatgcctacctt
tattatttattaggcgaagaacttccttgcgacggacattatgaaaacctgcagaaagct
gcacaatggggattcaaaatctccgaccatatgaagaagtgccacagcctgcaggaagtg
ttcgattacatccattattgggatacagaacggaagaatttacctgtagccacggatggc
attgttttgaaagttaatagcctgaaacagcagaaaaacctcggtttcaccgcaaaatct
cctcgttgggccatcgcatacaagttccaggcagagcgtgcattgacccgcttaaacaag
gtgacttaccaagtgggaagaaccggagcagtaacccctgttgccaacctggatccggta
caattatcgggtacaatcgtaaaacgcgcctcactgcataatgcagatatcattgaaggg
ctcgacttgcatgtcggcgatatggtttatgtagaaaaaggcggtgaaatcatacccaaa
attaccggagtagataaagatgcccggagtatgatggtaggtgaaaaagtgaagttcatc
actcattgccctgaatgtggcagcaaattaatccgttacgagggagaagctgcgcattat
tgccccaacgaaacggcttgtccgcctcagataaaaggaaagatcgagcatttcatcagc
cggaaggctatgaacattgacggattaggcccggaaactgtggatatgttctaccggtta
ggactcattaaggatacggcagatctgtacaagctgactgtggacgatatcaagaatctg
gaccgtatgggagataagtcggcggaaaatatcgtcaagggtattgcccaaagtaaggaa
gtgccttttgagcgagcgttgttcgccctgggtatccgcttcgttggtgaaactgtagca
aagaaaatagctaagtccttcactgacatagaagaactggaaaatgcagatcttgaaaga
ttgataaatatcgatgaaatcggtgagaaaatagcgcaaagcatcatttcctacttcgct
aaccctctgaatagagaattgatagagcgactgaaaattgccggattacagtttagccgg
aaggaagaagatctgagcggctataccgataagcttgtcggacagtctattgtaatcagc
ggcgtgttcacccatcactccagagacgaatataaagatttgatagagaagaatggagga
aaaaatgtaggtagtatttctgccaagaccagttttatcctggcaggagaaaatatggga
cccgctaaattggaaaaagcgcaaaagctgggtgtacagataatgagcgaagatgagttt
ttagcgctcatttcgtaa
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integrated database retrieval system
