Burkholderia cenocepacia DDS 22E-1: DM39_2087
Help
Entry
DM39_2087 CDS
T03308
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcen
Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03030
DNA replication
bcen03410
Base excision repair
bcen03420
Nucleotide excision repair
bcen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM39_2087 (ligA)
03410 Base excision repair
DM39_2087 (ligA)
03420 Nucleotide excision repair
DM39_2087 (ligA)
03430 Mismatch repair
DM39_2087 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcen03032
]
DM39_2087 (ligA)
03400 DNA repair and recombination proteins [BR:
bcen03400
]
DM39_2087 (ligA)
Enzymes [BR:
bcen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DM39_2087 (ligA)
DNA replication proteins [BR:
bcen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DM39_2087 (ligA)
DNA repair and recombination proteins [BR:
bcen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DM39_2087 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DM39_2087 (ligA)
MMR (mismatch excision repair)
DNA ligase
DM39_2087 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DM39_2087 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AIO32958
UniProt:
A0AAN0VMJ2
LinkDB
All DBs
Position
1:complement(2277481..2279556)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTPAEPPASQPDARAAWLRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEADHPE
FVTPDSPTQRVGGEVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKAVDLAGS
VTDPVEYACELKFDGLAISLRYEGGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAD
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
AYGIGVLDGMPMPDTHSGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEKRDGLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPGDAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLDPIMNASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEEGLHQLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaccccagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaacttcagcaggcgaactacgcctactacgtgctcgaccagcccgatctgccg
gacgccgaatacgaccggctgttcgccgagctgcagcagctcgaagccgatcatcccgaa
ttcgtgacgcccgattcgccgacgcagcgcgtgggcggcgaggtggcgagcggcttcacg
ccggtggttcacgatgcgccgatgctgtcgctgaacaacggcttcgcggacgacgacatt
gtcgcgttcgacaagcgtgtggccgatgcgctcggcaaggccgtcgacctggccggctcg
gtgacggacccggtcgaatacgcgtgcgagctgaagttcgacgggctcgcgatctcgctg
cgctacgagggcggcgtgttcgtgcaggcgtcgacgcgcggcgacggcacgaccggcgag
gacgtgaccgagaatgtccgcaccatccgttcgattccgctgaagctgaagggcgccgac
gtgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgatccgaagatcaccgcgcagcggccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacggcatgccgatgcccgacacgcacagcgggctgctc
gactggtacgagacgctcggcctgccggtgaaccgcgagcgcgcggtcgtgcacggcgcg
gacgggctgctcggctttttccgcaaggtcggcgagaagcgcgacgggctgccgtacgat
atcgacggcgtcgtctacaaggtgaaccggcgcgacgagcaggatcggctcggcttcgtg
tcgcgcgccccgcgtttcgcgctcgcgcacaagttccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtcgcgcggctc
gagccggtgttcgtcggcggcgcgaccgtgaccaacgcgacgctgcacaacgaggacgaa
gtccgccgcaaggacatccgcatcggcgacacggtgatcgtgcggcgcgcgggcgacgtg
attccggaggtggtcggtgcggtgctcgaccggcgtccgggcgatgcggccgaattcgtg
atgcccaccgagtgcccggtgtgcggctcgaagatcgagcgcctgcccgacgaggcgatc
gcgcgttgcacgggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgaaaagatcatcgaccagctcgtc
gagctgaacctggtgcgcacgccggccgacctgttcaatctcggcttcgcgacgctcgcc
gagctcgatcggttcgccgagaagtccgcgcagaacctgctcgattcgctcgagaaagcg
aagcacacgacgctcgcgcgcttcatctacgggctcggcatccgccatgtcggcgagtcg
accgcgaaggacctcgcgaagcacttcggttcgctcgacccgatcatgaacgcgtcgatc
gacgagctgctcgaagtcaacgacgtcgggccgatcgtcgccgaatcgatccaccagttc
ttcgccgaagagcacaaccgcaccgtgatcgaacagctgcgcgcgccgggcaaggtcacg
tggccggaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgaccggcacgctgcccaacctcacgcgcgacgcggcgaaggagatgctggaggcg
gcgggcgcgaaagtggcgggctcggtgtcgaagaagacggattacgtggtcgcgggcgcc
gaggccggcagcaagctggcgaaggcggaggaactcggtattcccgtgctggacgaagaa
gggctgcaccaactcctggagggtcatgcgcgatga
DBGET
integrated database retrieval system
