Burkholderia cenocepacia H111: I35_2022
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Entry
I35_2022 CDS
T03804
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bceo
Burkholderia cenocepacia H111
Pathway
bceo03030
DNA replication
bceo03410
Base excision repair
bceo03420
Nucleotide excision repair
bceo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bceo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I35_2022 (ligA)
03410 Base excision repair
I35_2022 (ligA)
03420 Nucleotide excision repair
I35_2022 (ligA)
03430 Mismatch repair
I35_2022 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bceo03032
]
I35_2022 (ligA)
03400 DNA repair and recombination proteins [BR:
bceo03400
]
I35_2022 (ligA)
Enzymes [BR:
bceo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I35_2022 (ligA)
DNA replication proteins [BR:
bceo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I35_2022 (ligA)
DNA repair and recombination proteins [BR:
bceo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I35_2022 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I35_2022 (ligA)
MMR (mismatch excision repair)
DNA ligase
I35_2022 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I35_2022 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CDN60545
LinkDB
All DBs
Position
1:complement(2184183..2186258)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPE
LVTPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKATDLAGS
VTDPVEYACELKFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKH
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagcaagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaactcgagcgggcgaactacgcctattacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctgttccgtgagctgcagcagctcgaaaccgaccatcccgaa
ctcgtgacgcccgattcgccgacgcagcgcgtcggcggcgaagcggccggcggcttcacg
ccggtcgtccacgatgcgccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gtcgcgttcgacaagcgcgtcgctgatgcgctcgccaaggcgaccgatctcgccggctcg
gtgaccgaccccgtggaatacgcgtgcgaactgaagttcgacggcctggcgatttcgctg
cgctacgagaacggcgtgttcgtgcaggccgcgacgcgcggcgacgggacgacgggcgag
gacgtgaccgagaacgtgcgcacgatccgctcgattccgctgaaactgaagggcaagcac
gtgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgactcgaagatcaccgcgcagcggccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacgggatgccgatgcccgacacgcacagcgcgctgctc
gactggtacgaggcgttcggcctgccggtgaaccgcgagcgcgcggtcgtgcacggcgcc
gaaggtttgctcgacttcttccgcaaggtcggcgagaagcgcgagtcgctgccatacgac
atcgacggcgtcgtctacaaggtcaaccggcgcgacgagcaggagcggctcggcttcgtg
tcgcgtgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgcctc
gagccggtgttcgtcggcggggcgaccgtgaccaacgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccggatcggcgacaccgtgatcgtgcgccgcgcgggcgacgtg
atcccggaagtggtcggcgcgctgctcgaccggcgcccggcggacgcggccgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaagatcgagcgcctgccggacgaggcgatc
gcgcgctgcaccggcgggctgttctgcccggcgcagcgcaagcaggcgctgtggcatttc
gcgcaacgccgcgcgctcgacatcgacggtctcggcgagaagatcatcgatcagctcgtc
gaactgaatctggtgcgcacgccggccgacctgttcaatctcgggttcgcgacgctggcc
gaactcgaccggttcgcggagaagtccgcgcagaatctgctcgattcgctcgagaaggcg
aagcacacgacgctcgcgcgcttcatctacgggctcggcatccgccatgtcggcgaatcg
accgcgaaggatctcgcgaagcatttcggctctctgacgccgatcatggacgcgtcgatc
gaggaactgctcgaagtgaacgacgtcggaccgatcgtcgccgagtcgattcaccagttc
ttcgcggaagagcacaaccggacggtgatcgagcagttgcgcgcgccgggcaaggtcacg
tggccggaagggccgcccgcgccgaaagcgccgcagggcgtgctcgccggcaagacggtc
gtgctgaccggcacgctgccgaatctgacgcgcgatgcggcgaaggaaatgctcgaagcg
gcgggcgccaaggtggccggctcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagac
ggtctgcaccaactcctggagggtaatacgccatga
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