Burkholderia cenocepacia DWS 37E-2: DM40_2661
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Entry
DM40_2661 CDS
T03488
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcew
Burkholderia cenocepacia DWS 37E-2
Pathway
bcew03030
DNA replication
bcew03410
Base excision repair
bcew03420
Nucleotide excision repair
bcew03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM40_2661 (ligA)
03410 Base excision repair
DM40_2661 (ligA)
03420 Nucleotide excision repair
DM40_2661 (ligA)
03430 Mismatch repair
DM40_2661 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcew03032
]
DM40_2661 (ligA)
03400 DNA repair and recombination proteins [BR:
bcew03400
]
DM40_2661 (ligA)
Enzymes [BR:
bcew01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DM40_2661 (ligA)
DNA replication proteins [BR:
bcew03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DM40_2661 (ligA)
DNA repair and recombination proteins [BR:
bcew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DM40_2661 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DM40_2661 (ligA)
MMR (mismatch excision repair)
DNA ligase
DM40_2661 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DM40_2661 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIO42602
LinkDB
All DBs
Position
1:complement(2874282..2876357)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPE
LVTPDSPTQRVGGEVASGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGS
VMDPVEYACELKFDGLAISLRYERGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGAH
VPAVLDVRGEVLMFKRDFARLNERQRVAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGADGLLGFFRKVGEKRDSLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLNPIMDASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgatcaactcgagcgggcgaactacgcctattacgtgctcgatcagccggatctgccc
gacgccgaatacgaccggctgttcggcgagctgcagcaactcgaagccgatcatcccgaa
ctcgtgacccccgattcgccgacgcagcgcgtcggcggcgaagtggcgagcgggttcacg
ccggtcgtccacgacgcgccgatgctgtcgctgaacaacggctttgccgatgaggacatc
gtcgcgttcgacaagcgcgtcgccgatgcgctcgcgaagacgaccgatctcgccggctcg
gtgatggaccctgtcgaatacgcatgcgagctgaagttcgacggtctcgcgatctcgctg
cgctacgagcgcggcgtgttcgtgcaagccgcgacgcgcggcgacggcacgaccggagag
gacgtgaccgagaacgtccgcacgatccgctcgatcccgctgaagctgaagggcgcacac
gtacccgccgtgctcgacgtgcgcggcgaagtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgtggccgagcagcgcgaattcgcgaacccgcgcaacgccgcg
gccggcagcctgcgccagctcgatccgaagatcaccgcgcagcgtccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacggaatgccgatgccggacacgcacagcgcgctgctc
gactggtacgagtcgctcggcctgccggtgaaccgcgaacgtgcggtcgtgcacggtgcc
gatggcttgctcggcttcttccgcaaggtcggcgagaagcgcgattcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaaccggcgcgacgaacaggatcggctcggcttcgta
tcgcgtgcaccgcgtttcgcgctcgcgcacaagttccccgcacaggaagcgctgacgaaa
ctcgtcgcgatcgacgtgcaggtcggccgcaccggtgcgatcacgccggttgcgcgcctc
gaaccggtgttcgtcggaggcgcgacggtgaccaacgcgacgctgcacaacgaggatgaa
gtgcgccgcaaggacatccggatcggcgacaccgtgatcgtgcggcgggcgggcgacgtg
attccggaagtggtcggcgcgctgctcgaccgacgtccggcggacgcggccgagttcgtg
atgccgaccgagtgcccggtgtgcggctcgaagatcgagcgtctgccggacgaagcgatc
gcgcgctgcactggcggcctgttctgtccggcgcagcgcaagcaggcgttgtggcacttt
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgatcagctcgtc
gagttgaatctcgtgcgcacgccggccgacctgttcaatctcggcttcgcgacgctcgcg
gagctcgaccggttcgcggagaaatccgcccagaacctgctcgactcgctcgagaaggcc
aagcacacaacgctcgcgcgcttcatctacgggctcggcattcgccatgtcggcgagtcg
accgcgaaggatcttgcgaagcacttcgggtctctgaatccgatcatggatgcgtcgatc
gacgaactgctcgaagtaaacgacgtcgggccgatcgtcgccgagtcgatccatcagttc
ttcgcggaagagcacaaccgcaccgtgatcgagcaactgcgcgcgcccggcaaggtcacg
tggccggaaggcccgcccgcaccgaaggcgccgcagggcgtgctggccggcaagaccgtc
gtactgacgggcacgctgccgaacctcacgcgcgacgcggctaaggagatgctcgaagcg
gcgggcgcgaaggtcgccgggtcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagcgggcagcaagctcgcgaaggcggaggaactcgggatccccgtactggacgaagac
ggactgcatcaactcctggagggcaatacgccatga
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