Burkholderia cenocepacia HI2424: Bcen2424_2024
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Entry
Bcen2424_2024 CDS
T00415
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bch
Burkholderia cenocepacia HI2424
Pathway
bch03030
DNA replication
bch03410
Base excision repair
bch03420
Nucleotide excision repair
bch03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bcen2424_2024
03410 Base excision repair
Bcen2424_2024
03420 Nucleotide excision repair
Bcen2424_2024
03430 Mismatch repair
Bcen2424_2024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bch03032
]
Bcen2424_2024
03400 DNA repair and recombination proteins [BR:
bch03400
]
Bcen2424_2024
Enzymes [BR:
bch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bcen2424_2024
DNA replication proteins [BR:
bch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bcen2424_2024
DNA repair and recombination proteins [BR:
bch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bcen2424_2024
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bcen2424_2024
MMR (mismatch excision repair)
DNA ligase
Bcen2424_2024
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bcen2424_2024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABK08775
UniProt:
A0K8E8
LinkDB
All DBs
Position
1:complement(2242818..2244893)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPE
LVTPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGS
VTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKH
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaactcgagcgggcgaactacgcctactacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctgttccgcgagttgcagcagctcgaaaccgaccatcccgaa
ctcgtgacacccgattcgccgacgcagcgtgtcggcggcgaagcggccggcggcttcacg
ccggtcgtccacgatgcgccgatgctgtcgctgaacaacggctttgccgacgaggacatc
gtcgcgttcgacaagcgcgtcgccgacgcgctcgccaagacgaccgatctggccggctcg
gtgaccgaccccgtcgaatacgcgtgcgaactgaagttcgacggcctggcgatctcgctg
cgctacgagcaaggcgtgttcgtgcaggccgcgacgcgtggcgacgggacgacgggcgag
gacgtgaccgagaacgtgcgcacgatccgctcgattccgctgaagctgaagggcaagcac
gtgccggcggtgctcgacgtacgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcagcg
gccggcagcctgcgccagctcgactcgaagatcaccgcgcagcggccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacgggatgccgatgcccgacacgcacagcgcgctgctc
gactggtacgagtcgctcggcctgccggtgaatcgggagcgcgcggtcgtgcacggcgcc
gaaggcttgctcgacttcttccgcaaggtcggcgagaagcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtcaaccggcgcgacgagcaggagcggctcggcttcgtg
tcgcgtgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggtgcgatcacgccggtcgcgcgtctc
gagccggtgttcgtcggcggcgcgaccgtgaccaatgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccggatcggcgacaccgtgatcgtgcggcgtgcgggcgacgtg
attccggaagtcgtcggcgcgctgctcgaccggcgcccggcggatgcggccgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaagatcgagcgcctgccggacgaggcgatc
gcgcgctgcacgggcgggctgttctgcccggcgcagcgcaagcaggcgctgtggcatttc
gcgcaacgccgcgcgctcgacatcgacggcctcggcgagaagatcatcgaccagctcgtc
gagctgaatctcgtgcgcacgccggccgacctgttcaatctgggcttcgcgacgctggcc
gaactcgaccggttcgccgagaagtccgcgcagaacctgatcgattcgctcgagaaggcc
aagcatacgacgctcgcgcgcttcatctacgggctcggcatccgccatgtcggcgaatcg
accgcgaaggatctcgcgaagcatttcggctcgctgacgccgatcatggacgcgtcgatc
gaggaactgctcgaagtcaacgacgtcgggccgatcgtggccgagtcgctccaccagttc
ttcgcggaggagcacaaccggaccgtgatcgagcagttgcgcgcgccgggcaaggtcacg
tggcccgaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgaatctcacgcgcgatgcggcgaaggagatgctcgaagcg
gcgggcgcgaaagtggccggttcggtgtcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagat
ggtctgcaccaactcctggagggcaatacgccatga
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