Niallia circulans: C2I06_21795
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Entry
C2I06_21795 CDS
T06357
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcir
Niallia circulans
Pathway
bcir03030
DNA replication
bcir03410
Base excision repair
bcir03420
Nucleotide excision repair
bcir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2I06_21795 (ligA)
03410 Base excision repair
C2I06_21795 (ligA)
03420 Nucleotide excision repair
C2I06_21795 (ligA)
03430 Mismatch repair
C2I06_21795 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcir03032
]
C2I06_21795 (ligA)
03400 DNA repair and recombination proteins [BR:
bcir03400
]
C2I06_21795 (ligA)
Enzymes [BR:
bcir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C2I06_21795 (ligA)
DNA replication proteins [BR:
bcir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C2I06_21795 (ligA)
DNA repair and recombination proteins [BR:
bcir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C2I06_21795 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2I06_21795 (ligA)
MMR (mismatch excision repair)
DNA ligase
C2I06_21795 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2I06_21795 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
RNA_pol_A_CTD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AYV69259
UniProt:
A0A268F746
LinkDB
All DBs
Position
4560962..4562986
Genome browser
AA seq
674 aa
AA seq
DB search
MEQNLAEKRVKELHNLLNQYGYEYYVLDNPSVPDSEYDALLNELIQLEEKFPSLKTNDSP
SQRIGGEVLDMFSKVQHQKPMLSLGNAFNEADLRDFDRKVRAVIGDDFSYVCELKIDGLA
VSLRYENGLFEQGATRGDGTTGEDITANLKTIRSIPLRLNQAVSLEVRGEAFMPKKSFEA
LNKAKDENGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYAIGDAGQTGIQSHSEGLD
LLDTLGFKTNKERKRCATIEDVLHYIEGWQEKRPHLPYEIDGIVIKVDNLVHQEQLGTTV
KSPRWAIAYKFPAEEVMTKLLSIELNVGRTGVITPTAVLEPVKVAGTTVKRASLHNEDLI
REKDIKLGDMVVIKKAGDIIPEVVNVLVEKRTGEEEEFLMPTHCPECESELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGERVISQLFSEKLIEDVADLYTLQFDQLIQL
ERMGEKSVHNLLEAIEASKQNSLERLLFGLGIRHVGAKAAKTIAMEFKTMDQLMVATKED
LTAINEIGEKMADSIVTFFEQEEVIELITELKTYGVNMEYTGPLPIAVEESDSVFSGKTI
VLTGKLEQLSRNEAKEQIELLGGKITGSVSKKTDLVIAGEEAGSKLTKAEQLGIEVWDEE
RLMAELKNKGVFNE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaaccttgcagagaagcgagtaaaagagctgcataatttattaaatcaatat
ggatatgaatattatgttctggataatccttctgttcctgattcggaatatgacgcatta
ttaaatgaattaatccagttggaggaaaaattcccaagcttaaaaaccaatgattctcca
tcccagagaatcggaggagaagtattggatatgttctcaaaggttcagcatcaaaagccg
atgttgagcttaggaaatgcatttaatgaggcggatttacgtgattttgatcggaaggtt
cgtgcagttatcggtgatgatttttcatatgtttgtgaattaaagatagatgggcttgct
gtttctcttcgatatgagaatggtttatttgagcaaggagctacacgaggagacggaacc
actggagaagatattacagcgaatctcaaaacaattcgctccattccgctccgattaaat
caggcggtgagtttagaagtccgtggagaagcattcatgccaaaaaagtcgtttgaggca
ctgaataaagcgaaagatgaaaatggagaagagccatttgcaaatccacggaatgctgca
gcaggctcgttacgtcaattagatcctcgcattgcggcttctcgaaatttagatattttt
ctctatgcgattggagacgctgggcagactggtattcaatctcatagcgaaggccttgat
ttattagatactcttggctttaagacgaataaagaaagaaaaagatgtgcaaccatcgaa
gatgttttacattatattgaaggctggcaggaaaaacgccctcacttgccatacgaaata
gatggtattgtgataaaggtagataatttagtacatcaagaacagcttggaacaaccgtg
aaaagtccaagatgggcgatagcatataagtttccagctgaagaagtaatgacgaagctt
ctaagcatcgaactaaatgttggaagaacaggtgtgattacacctactgctgtacttgag
ccagtaaaggttgcgggtacaacagtgaaaagagcttccttgcataatgaagacttaata
agagaaaaagatattaagcttggcgatatggtcgtaataaaaaaggctggagacattatt
ccagaagtagtaaatgttttagtagaaaaaagaactggtgaagaagaagaatttctgatg
ccaactcattgtcctgaatgcgagagtgaacttgtacgtatcgaaggggaagtggcctta
cgatgtattaatccaaaatgcccagcacaaattagggaaggcttgattcattttgtttct
cgaaatgcaatgaatatagacggactaggtgagcgagtaatcagccaattattttccgaa
aaactaatcgaagatgttgctgatttatacactttacaattcgaccaattaattcaatta
gaaagaatgggcgaaaaatctgttcataatttattagaagcaattgaagcatcaaagcaa
aactcccttgaaaggttattatttggtttaggaattcgacatgtaggggccaaggcggcc
aaaacaattgcgatggaatttaaaacaatggaccagcttatggtagccactaaagaggat
ttaacagctattaacgaaattggtgaaaaaatggctgattcgattgttacttttttcgaa
caagaagaagtaatcgaattaattactgagcttaaaacatatggtgttaatatggaatat
accggtccattaccaatagcagtagaagagagtgattcagtcttttctggcaaaacaatt
gtattaacaggaaagctagagcagctttctcgtaatgaagcaaaagaacaaattgaatta
ttaggtggtaaaataacaggaagtgtttcaaagaaaacagatttagtgattgcaggggaa
gaggcaggaagtaaactgacaaaagcggaacagctaggcattgaagtttgggatgaggaa
agacttatggcagaattgaagaataaaggtgtgtttaacgaatga
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