Shouchella clausii: ABC1087
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Entry
ABC1087 CDS
T00228
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcl
Shouchella clausii
Pathway
bcl03030
DNA replication
bcl03410
Base excision repair
bcl03420
Nucleotide excision repair
bcl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABC1087 (ligA)
03410 Base excision repair
ABC1087 (ligA)
03420 Nucleotide excision repair
ABC1087 (ligA)
03430 Mismatch repair
ABC1087 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcl03032
]
ABC1087 (ligA)
03400 DNA repair and recombination proteins [BR:
bcl03400
]
ABC1087 (ligA)
Enzymes [BR:
bcl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABC1087 (ligA)
DNA replication proteins [BR:
bcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABC1087 (ligA)
DNA repair and recombination proteins [BR:
bcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABC1087 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABC1087 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABC1087 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABC1087 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BAD63625
UniProt:
Q5WJ30
LinkDB
All DBs
Position
1178888..1180903
Genome browser
AA seq
671 aa
AA seq
DB search
MDKHQAEKRLKELRLLLEDYGYHYYVLDTPKVPDSEYDRLMNELLQLEADYPDLVTEDSP
SVRIGGPPAPSFKKVAHRVPMMSLSNAFNEEDLRAFDRRVRQAVGEHVSYVCELKFDGLA
VSLTYENGKLVRGATRGDGTIGEDITNNLRTVPAIPLRLKQPYSIEVRGEAYMPKASFER
LNEAKEQAGEEKFANPRNAAAGSLRQLDPKIAAKRNLSLFAYSIGEVEGKNVQTHFDSLM
FLKELGFKVNEEAAECETIEDVIAYTEKWSERRHELPYEIDGVVVKVNSLADHEKLGFTA
KSPRWATAFKFPAEEVLTVLRDIELNVGRTGVVTPTALLDPVLVAGTTVRRASLHNEDLI
REKDVKLGDTVIVKKAGDIIPEVVGVLTDKRTGEEVDFHMPTECPECHSVLERLEGEVAL
RCLNPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFLHQLIADVADLYLLEREELLQL
ERMGEKSVDNLLAAIEASKENSLERLLFGLGIRFVGAKAAKTLAYEFETMERLQEATFEQ
LLAVNEIGEKMADSIVSYFQKPEVATLLEKLANAGVNMTYTGPKKAAIAEEAGVFAGKTV
VLTGKLSQWTRKEAQEKIEALGGTVTGSVSKKTDLVVAGEDAGSKQKKAESIGIEIWTEE
QFTQAVEQSEQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcaccaagcagaaaaacggcttaaagagctgcgcctcctattggaggactat
ggctaccattattatgtgctcgatacgcctaaagtccccgactcggagtatgaccgcctc
atgaatgaattgcttcaacttgaggcggactatccagatttggttacggaagactcacca
agcgtacgcattggcgggccgccggctccgtcctttaaaaaagtggcccaccgagtgccg
atgatgagcttgtccaatgccttcaatgaggaagatttgcgcgcgttcgaccgccgcgtc
cgccaagcggtaggcgagcacgtctcctacgtgtgcgaattaaaatttgatggccttgct
gtatcgcttacgtatgaaaatggaaagctcgtccgcggtgcgactcgtggggacggaacg
attggcgaagatataacaaacaatttgagaaccgttcctgccattcctttgcggttaaaa
cagccttattcgatcgaggtgcgcggcgaagcatatatgccaaaagcatcattcgaacgt
ttaaacgaagcaaaagaacaggcgggagaagaaaaattcgccaaccctcgtaatgcggca
gctggctccttgcgccagctcgacccgaaaattgccgccaaacggaatttatcgttattt
gcctactcgattggcgaagtcgaaggcaaaaacgtgcaaacccattttgacagcttgatg
tttttgaaagaactcggctttaaagtaaacgaagaagcagcagaatgcgaaacgattgag
gacgtcattgcctatacagaaaaatggagcgaacggcgccatgagcttccatatgaaatt
gatggagtcgtcgtcaaagtcaattccttggccgaccatgaaaaactaggctttacagca
aagagtccccggtgggcaacggcatttaagtttcctgccgaagaagtgctgacagtttta
cgcgatattgaactaaatgttggtcgaacaggcgtagtaacgcctactgccctattagat
cccgtgcttgttgcgggaacaaccgtaaggcgggcttccttgcataatgaagatttgatc
cgcgaaaaagacgtcaagcttggcgatacggtcattgtcaaaaaagcaggtgacatcatc
ccagaagtcgttggcgttttgacggataagcgaacaggcgaggaagttgactttcatatg
ccgacagagtgtcctgagtgccatagcgttttggaacgcttggaaggggaagtggcgttg
cgctgtttaaacccgaagtgcccagcgcaaattcgtgaagggcttatccactttgtatca
cgaaatgcgatgaacatcgacggccttggcgaaaaagtgatcagccaattgtttttgcat
caattgatcgctgatgtggctgatttatatttgttggaacgtgaggaattgctccagctg
gaacggatgggagaaaaatctgtcgacaatttgttggcggcgattgaagcctcaaaagaa
aattcgcttgaacggctgttgtttgggctcggcatccggtttgtcggtgcgaaggcagcg
aaaacgctagcatatgagtttgagactatggaacggctccaagaggcaacgtttgaacaa
ttgcttgccgtcaatgagattggcgagaaaatggcagactcgattgtctcctattttcaa
aagccagaggtggccacgttgttagaaaaactagccaatgctggcgtcaacatgacttac
acaggaccgaaaaaagcagcgattgccgaagaagctggggtattcgccggcaaaacggtt
gtgctgaccggaaaactgtcccagtggacgcggaaagaagcacaggaaaaaatcgaagcg
ctcggcggcacagtgacgggcagtgttagcaaaaaaaccgatttggttgtcgctggggaa
gatgcgggctctaaacaaaaaaaagcggaaagcattggaattgagatttggacagaggaa
cagtttacacaagcggttgaacaaagcgaacagtaa
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