Heyndrickxia coagulans DSM 1 = ATCC 7050: BF29_1844
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Entry
BF29_1844 CDS
T03712
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcoa
Heyndrickxia coagulans DSM 1 = ATCC 7050
Pathway
bcoa03030
DNA replication
bcoa03410
Base excision repair
bcoa03420
Nucleotide excision repair
bcoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BF29_1844 (ligA)
03410 Base excision repair
BF29_1844 (ligA)
03420 Nucleotide excision repair
BF29_1844 (ligA)
03430 Mismatch repair
BF29_1844 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcoa03032
]
BF29_1844 (ligA)
03400 DNA repair and recombination proteins [BR:
bcoa03400
]
BF29_1844 (ligA)
Enzymes [BR:
bcoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BF29_1844 (ligA)
DNA replication proteins [BR:
bcoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BF29_1844 (ligA)
DNA repair and recombination proteins [BR:
bcoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BF29_1844 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BF29_1844 (ligA)
MMR (mismatch excision repair)
DNA ligase
BF29_1844 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BF29_1844 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
RNA_pol_A_CTD
Nlig-Ia
PTCB-BRCT
HHH_8
HHH_3
Zn_ribbon_NUD
5_3_exonuc
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
AJH78437
UniProt:
A0A8B4BST4
LinkDB
All DBs
Position
complement(1800047..1802053)
Genome browser
AA seq
668 aa
AA seq
DB search
MDNHAAAARAAELRKLLNQYSYEYYVLDRPSVPDAEYDRLLRELQEIENAHPELITPDSP
TQRVGGEPLSGFAKVVHDTPMLSLANAFNEADLRDFDRRVRETAGDPYEYVCELKIDGLA
ISLKYENGLFVQGSTRGDGTIGEDITANLRTVRSIPLRLNEPVTIEARGECFMPKKSFEA
LNRIKEENGEEPFANPRNAAAGSLRQLDPKIAASRNLDTFMYAIGDTTGLNIATHSEGLA
YLEKLGLKVNKETRICRDIGEVLEFIAEWTEKRPALPYEIDGIVIKVNDYAQQAALGTTV
KSPRWAIAYKFPAEEVVTKLTGIEVKVGRTGVVTPTAILDPVRVAGTTVQRATLHNEDLI
REKDIRIGDYVIVKKAGDIIPEVVRPIPERRTGEERAFSMPSHCPDCGSELVRLEDEVAL
RCINPNCPAQIREGLIHFVSRNAMNIEGLGEKVISQLFAHELIHNVADIYRLKKEELLQL
ERMGEKSVSNLLAAIEASKKNSLEKLLFGLGIRHVGAKAAKILAEHFETMERLSEATREE
LEAIPDIGEKMADSIVAYFENEEALGLVRELAVLGVNMVYKGPKRAEKRNADSPFAGKTV
VLTGKLVNLTRNEAKEKLEALGANVTGSVSKNTDLVIAGEDAGTKLAKAEQLGIEVWDEA
AFLERLNS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataatcacgcggcagccgcccgggcagccgaactgcgcaaactgctgaaccagtac
agttatgaatattatgtgctcgaccgcccgagcgtcccggatgcggaatacgacaggctt
ttgcgtgaactgcaggagatcgaaaatgcgcatccggagttgatcacgccggattcacca
acgcaaagggtcggaggagaacctttatccggatttgccaaagtggtccatgatacaccg
atgctcagtctggcaaatgcctttaacgaagccgaccttcgcgatttcgaccgcagagtc
cgggagacggccggcgatccatatgaatacgtgtgcgaactgaaaatcgacgggctggcg
atttcgcttaaatatgagaatggtttattcgtccaagggtccacaagaggggacgggacg
atcggtgaagacattacggccaacctcagaaccgtccgctcgataccgctcaggctgaat
gaaccggtcaccatcgaggcgcgcggggaatgttttatgccgaaaaagtcttttgaggca
ttgaaccgtatcaaagaagaaaacggggaagaaccgtttgccaatccgcgcaatgcggca
gccggctcgctccgccagctcgatccgaaaattgcggcatcccggaaccttgatacattt
atgtatgcgatcggtgatacaaccgggctcaatattgccacccatagcgaagggcttgcg
tatttggaaaagctcggccttaaggtcaataaagaaacaaggatatgccgggatatcggg
gaagtactcgaatttatcgcggaatggacggaaaaacggccggccctcccgtatgaaatt
gacggcattgtcattaaggtaaatgactatgcccagcaagccgcccttggcacaacggtg
aaaagcccgcgctgggccattgcttacaaatttcctgccgaagaagtagtcacaaaactg
accggcattgaagtaaaagtcggccgcaccggggttgtcacgccgactgcgatactggat
ccggtaagagtggccggaacaaccgtccagcgggccacgctccacaatgaagatctgatc
cgcgaaaaagatatccggattggggactatgtcatagtaaaaaaagcgggcgacatcatt
cccgaagtggtccgcccgattcccgaacggagaaccggcgaggagcgggcattttccatg
ccgtcccactgcccggactgcggcagcgagcttgtccggctcgaagatgaagtggcgctc
cgctgcattaacccgaactgcccggcgcagatccgcgaagggctgatccatttcgtatca
aggaatgcgatgaatattgaagggctgggggaaaaggtcatcagccagctgttcgcgcat
gaattgatccacaatgtcgcggatatttaccggctgaaaaaagaagaactgctgcaattg
gaaagaatgggggaaaaatcggtttccaatttgcttgccgcaattgaagcctcaaaaaag
aattcgctggaaaaattgctattcggcctcggcatccgccatgtcggcgccaaagctgcg
aaaattttagcagagcatttcgaaacaatggaacggctgtctgaagcaacgcgtgaagaa
ctggaagccatacccgatattggcgaaaagatggcggattccattgttgcgtattttgaa
aatgaagaagcgctcggcctggtccgggaattggctgtgctcggggtcaacatggtttat
aaaggccccaaacgtgcggaaaagcgcaatgcagattcgccttttgccggaaagacggtc
gttttaaccgggaaactggtgaacttgacccgcaacgaagcaaaagaaaaactggaggcg
ctcggggcaaatgtgaccggcagcgtaagcaaaaataccgaccttgtcatcgccggggaa
gatgcgggcacaaagctggccaaagcggaacagctcggcattgaagtatgggatgaagca
gcgtttttggaacggctcaattcataa
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integrated database retrieval system
