Blautia producta DSM 935: BLCOC_06890
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Entry
BLCOC_06890 CDS
T09601
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcoc
Blautia producta DSM 935
Pathway
bcoc03030
DNA replication
bcoc03410
Base excision repair
bcoc03420
Nucleotide excision repair
bcoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BLCOC_06890 (ligA_1)
03410 Base excision repair
BLCOC_06890 (ligA_1)
03420 Nucleotide excision repair
BLCOC_06890 (ligA_1)
03430 Mismatch repair
BLCOC_06890 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcoc03032
]
BLCOC_06890 (ligA_1)
03400 DNA repair and recombination proteins [BR:
bcoc03400
]
BLCOC_06890 (ligA_1)
Enzymes [BR:
bcoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BLCOC_06890 (ligA_1)
DNA replication proteins [BR:
bcoc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BLCOC_06890 (ligA_1)
DNA repair and recombination proteins [BR:
bcoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BLCOC_06890 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLCOC_06890 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
BLCOC_06890 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BLCOC_06890 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
Nlig-Ia
BRCT_2
Cel124_C
Motif
Other DBs
NCBI-ProteinID:
WPX72353
LinkDB
All DBs
Position
complement(773217..775220)
Genome browser
AA seq
667 aa
AA seq
DB search
MISQIKAMKKLVSWLNIQRNAYYNSDSPNVSDYEYDKKFEELEQLEKKSGIVLSDSPTQS
VGYMPVSELGKVKLKTPLLSLDKTKQTERLYHFIGNHAILLMLKLDGLTVELDYENGRLV
QACTRGDGMIGEDITHNIPAFKNVPLSIPYQKKLRLSGEALILNSDFELLKDTLLDSTGK
KYSNTRNLASGSVRCLNPETCAKRHVHFLAFKVLEGLDESSDCKDSKHFRLSELQQLGFD
LCPYIFVENPHYQISDLKNDIQSLQELSEQQHLPIDGIVASYDSISYSESCGRTGRFYKD
GIAYKFEDETYVTVLRKILWTPTRSGIISPVAIFDTVNIDGCEVSRASLHNLSFIKNLEL
VPGCRILVSKRNMIIPHIEDNLDRGNYQESIPAFCSCCGHKTRIYTRKSQDGHLVETLHC
DNPACETQQLRNMVHFVEKKAMNIQGLSSATLEKFLEKGWIKSFQDIYHLDRYKDEIIQM
DGFRKASYTKLEKSINDSRNTTFTRYLVAMDIPLIGRTISEILNTHFDSDLNAFETAVLH
GYDFTQIEGIGCASNNFLHIWFADERNLKLWRELQTEMTFEERKEQNIMKEKTIFTGKII
VATGKLEHFTRDQINTKILELGAKPSNSVSKKTDYLIAGEKAGSKLSKAQNLGIKILTED
EFLQMIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
ttgatatcacaaataaaagcaatgaaaaaattagtatcctggcttaacatccagagaaat
gcatattacaactcagattccccaaacgtatcggattatgaatacgacaaaaaatttgag
gagctggaacaacttgaaaagaagagtggaattgtattatccgattctcccacgcaaagt
gtcgggtatatgcccgtcagtgaactggggaaagtaaaactgaagacccctctcctgtca
ctggataagactaaacagacagaaaggctgtatcattttattggtaatcatgcgatactc
cttatgctgaagttggacggactgactgtggaacttgactatgagaatggacgactggtg
caagcatgtaccagaggagatgggatgataggtgaggacatcactcataatatccctgct
tttaaaaacgtccctctctccattccgtaccagaaaaaactccgcctcagtggtgaagcg
cttattctaaacagtgattttgaattgctcaaagatactctgcttgacagtaccggaaag
aaatatagtaataccagaaatttagcctctggctctgtgcgctgtctgaatccggaaacc
tgcgctaaacgccatgtacactttctggctttcaaagtcttggaagggctggatgaatct
tctgattgtaaggattctaaacacttccgattatcggaacttcaacagttaggatttgat
ttgtgcccttacatatttgtggaaaacccgcactatcaaatatcggatttaaaaaatgat
atccagagtctccaggaactttctgaacagcagcaccttccaatagacggtattgttgca
agttatgacagtatttcctactcagaaagctgtggacgtaccggacgcttctataaagat
gggattgcatataagtttgaggatgaaacgtatgtaactgtactgcgtaaaatcttatgg
acaccaacccggtccggtatcatatctcctgtagcaattttcgatacagtcaatattgat
ggctgcgaagtgtcaagagcttctctgcacaatctttcctttataaaaaatttagaattg
gttccgggatgtcgcatcttagtgtcaaaacgcaacatgattatccctcacatagaagat
aatctggaccgtggcaattatcaggaatctattcctgccttttgttcctgctgtggtcat
aagacccggatttatacacgtaaatcacaagatggacatctggttgaaacactgcactgt
gataacccagcatgcgaaactcaacagctgcggaacatggtacattttgtggaaaagaaa
gccatgaatattcaggggctctcttctgccacattggaaaaatttctggaaaaaggctgg
ataaaatccttccaggatatttatcatctggatcgctacaaagatgaaattattcagatg
gatggatttaggaaggcttcgtacacaaaactggaaaaatctattaatgacagtcgaaat
actacatttacacgctatctggtggcaatggatattcctcttatcgggcgtaccataagt
gaaattctgaatacgcatttcgacagtgacttgaacgcatttgaaactgcagttttacat
gggtatgacttcacacagattgaaggaatcggctgtgcatctaacaatttcctccatata
tggtttgcagatgaacgaaacctgaaattatggcgagaattacagactgaaatgacattt
gaagaaagaaaggaacaaaatattatgaaagaaaagactatctttacaggaaaaatcatc
gttgcaacagggaaactggaacactttacacgtgaccagattaacacaaaaatcctcgag
cttggagccaaaccaagcaattctgtctctaaaaaaacggactatttgattgctggtgaa
aaagccggaagcaagctgtccaaagcacagaatctgggaataaaaatccttactgaagat
gaatttcttcaaatgattgcgtaa
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