Brevibacillus composti: JD108_03150
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Entry
JD108_03150 CDS
T07811
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcop
Brevibacillus composti
Pathway
bcop03030
DNA replication
bcop03410
Base excision repair
bcop03420
Nucleotide excision repair
bcop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JD108_03150 (ligA)
03410 Base excision repair
JD108_03150 (ligA)
03420 Nucleotide excision repair
JD108_03150 (ligA)
03430 Mismatch repair
JD108_03150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcop03032
]
JD108_03150 (ligA)
03400 DNA repair and recombination proteins [BR:
bcop03400
]
JD108_03150 (ligA)
Enzymes [BR:
bcop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JD108_03150 (ligA)
DNA replication proteins [BR:
bcop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JD108_03150 (ligA)
DNA repair and recombination proteins [BR:
bcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JD108_03150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JD108_03150 (ligA)
MMR (mismatch excision repair)
DNA ligase
JD108_03150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JD108_03150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
HHH_8
HHH_3
zf-IS66
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QQE74962
UniProt:
A0A7T5ELU1
LinkDB
All DBs
Position
587510..589525
Genome browser
AA seq
671 aa
AA seq
DB search
MDRLTAEARISELREQIEHHNRLYYIEDRPEITDQEYDQLMRELQNLEDLFPDMVTPDSP
TQRVGGAPLAAFEKVVHHTPMLSLGNAFGEEELRDFDRRVRQAVGNQEVRYVCELKIDGL
AISLHYENGIFVRGATRGDGQVGEDITQNLRTIRSIPLRLKRPLTLEVRGEAYMPRPAFE
KLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYAIGDLQGIAVESHSEGL
ELLESLGFKVNQERRTFDSIEDVISFVNSWVEKRPQLSYDIDGIVIKVDSYSQQAELGFT
AKSPRWAVAYKFPAEEAVTVLRGIEVSVGRTGTVTPTAILDPVSLAGTTVKRASLHNEDM
IREKGIMIGDHVMVRKAGDIIPEIVAVLPERRDGSETPFAMPTHCPECGSELVRLDEEVA
LRCINPMCPAQIREGIIHFVSRGAMNIEGLGEKVVAQLFQFEIIRSVADLYYLHEQRDIL
LGMERMGEKSVDNLLAAIEASKENSLEKLLFGLGIRLVGAKAARVLAEHFGEMDAIMQAK
EEELTQIDEIGPKMASSIVNYFEQPQAQAVIERLKAAGVNMRYKGIRVESGADLPLSGKT
IVLTGTLTTMTRTEAEEAIARLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAVMDE
EGFRQLLEQQE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggatcgattgacggcagaagccagaatcagtgaactgcgggaacaaatcgagcatcac
aaccgtctctattatatagaagaccgtccggaaattaccgaccaggagtacgatcagctc
atgcgggagctgcaaaatctggaggatctttttcctgacatggtcacgcccgattcgccg
acgcagcgggtgggcggggcccctttggctgcgtttgaaaaggtggtccaccatacgccg
atgctcagcctgggcaatgccttcggcgaggaagagctgcgcgattttgaccggcgcgtg
cgtcaggctgtcggcaatcaggaagtgcgctatgtctgcgaattaaagattgacggtttg
gccatttcccttcactatgagaacggaatattcgtgagaggggcgacgcggggcgatgga
caggtcggcgaggacatcacgcaaaacctgcggacgatccgctccattccgctccggctg
aagcgtccgctcacgctggaagtgcgcggagaggcgtacatgccgcgtcctgcttttgag
aaactgaacaaggagcgggaagagcggggggaggctctgtttgccaacccgcgtaactcc
gccgcaggctcgctgcgccagctcgatcccaagatcgccgcgtcccgccagttggatacc
tttatctacgcaatcggcgacctgcagggtatcgctgtggaatcgcacagcgaaggactg
gagctgctggagtcgctcggcttcaaggttaatcaggagcggcggacgttcgacagcatc
gaggacgtgatttccttcgtaaacagttgggtggagaagcgtccgcagctctcctatgac
atcgacggcatcgtcatcaaagtggacagctacagccagcaggcggaactgggctttacg
gccaaaagcccgcgctgggcggtggcgtacaagtttccggcagaggaagcggtgacggtg
ctgcgcggcatcgaagtgtccgtggggcgcaccggcacggtgacgccgacggcgatcctg
gacccggtcagcctggcggggacgaccgtcaaacgggcatcgcttcacaatgaagacatg
atacgggaaaaaggcattatgatcggcgaccacgtcatggtcagaaaagcgggagacatc
attcccgagatcgtggcagtcctgccggagcggcgcgacggaagcgagacgccgtttgcg
atgcccacacactgtccagagtgcggcagcgagctggtgcgcctcgacgaagaggtagcg
cttcgctgcatcaatccgatgtgtccggcccaaatccgcgaggggatcattcactttgtc
tcccgcggggcgatgaatatcgaaggcctgggtgaaaaggtcgtggcccagctctttcaa
ttcgaaatcatccgcagcgtggctgacctgtactacctgcatgagcagcgcgatatcctg
ctcgggatggagcgcatgggagaaaaatcggttgacaacctcctggccgcgatcgaagcg
agcaaggagaactccctggagaagctgttgtttggacttggcatccggctcgtgggggcc
aaggcggcgcgcgtgctcgccgagcattttggcgagatggacgcgatcatgcaagcaaaa
gaagaagaattgacgcagatcgacgagatcgggcccaagatggcgagcagcatcgtcaac
tacttcgagcagccgcaggcccaagcggtgatcgagcggctgaaggccgccggcgtcaat
atgcgttataaaggcattcgagtagagagtggagccgatttgccgctctccggcaagacg
atcgtcctcacgggcaccctgaccacgatgaccaggacggaggcagaagaggccatcgcc
cggctcggggggaaagtgacgggcagcgtgagcaagaaaacggatctcgtcatcgccggt
gaaaaggcaggctccaaactggagaaagcagagaagctgggcgtcgccgtcatggatgag
gaaggctttcgccaattgcttgagcagcaggagtag
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