Bifidobacterium coryneforme: BCOR_0906
Help
Entry
BCOR_0906 CDS
T03236
Name
(GenBank) LigA NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcor
Bifidobacterium coryneforme
Pathway
bcor03030
DNA replication
bcor03410
Base excision repair
bcor03420
Nucleotide excision repair
bcor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BCOR_0906
03410 Base excision repair
BCOR_0906
03420 Nucleotide excision repair
BCOR_0906
03430 Mismatch repair
BCOR_0906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcor03032
]
BCOR_0906
03400 DNA repair and recombination proteins [BR:
bcor03400
]
BCOR_0906
Enzymes [BR:
bcor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BCOR_0906
DNA replication proteins [BR:
bcor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BCOR_0906
DNA repair and recombination proteins [BR:
bcor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BCOR_0906
NER (nucleotide excision repair)
GGR (global genome repair) factors
BCOR_0906
MMR (mismatch excision repair)
DNA ligase
BCOR_0906
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BCOR_0906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AII74916
LinkDB
All DBs
Position
complement(1138286..1140883)
Genome browser
AA seq
865 aa
AA seq
DB search
MRSEEDEYTGGGTGYEGASEERPAIGSDRWIASLQPDDADAMRLGELDAGSLSAEAAQRL
WSKLAAWVESDQVAYYIDDAPVSSDAAYDARMRCLQELESSFPSLDTPQSPTHRVGGTFS
NDFTSVRHPSRMLSLDDVFSINELRQWYDGIRKDLDWPEDKALAMTSEVKIDGLALNLLY
HNGVLEQGLTRGDGVTGEDITLNVRTIQTIPQNLSGPAEDIPEFVEVRGEVFMRFDDFQA
LNEQQAKEGKPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGMGSLRWGAAHPKGSHDE
VIDQSQAYGLYRQWGIPISPHNRVVASFDQILDMIDYYGQHRNDIEHALDGIVVKLQDRD
LQRRLGTTSRAPRWAVAYKYPPEEVNTRLLDITVQVGRTGRITPVAILTPVSVAGSTVSR
TTLHNASEVKRKGILIGDTVVVRKAGDVIPELVGPVMEARKGREKDLKSFVMPETCPSCG
ARLAPAKEGDVDIRCPNVESCPAQLTERVIHMASRKALDIEHLGEQSAIALTNPDENRPD
SVDVYAPELREVLVDQGGQAAPYQPAPDLELPPRQSPVLTSEAGLFDLKVDDLRHVYVWR
EVPLMEQVEVEGKDGPSTSKRRVGGSGLWYRVPAFYNLPKSDQAAQGDRAMNSHEVQAED
AVLGKAGAEPSRTTLQMLQEIDKARHADLWRVLVALSIRHLGPTSARAIATRFPSLDAIE
HAGIDELSELDGVGPEIASSIVDWFSGARQPGDWRGKILDAWKADGVGSHVERSTKPQTL
KGMTVVVTGSLEDFSRDSAKEAIVERGGRASGSVSKKTTYVVVGDSPGSKAEKAESLGVP
ILDEAAFHRLLDTGSPDGQADQAEG
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagcgaagaagacgaatatacgggcggtggaaccgggtacgagggtgcctcggaa
gagaggccggcaatcgggagcgaccgctggatagcatcactgcaacccgatgatgccgat
gccatgcggctgggtgagctggatgccggttccctgagcgctgaggctgctcaacgcctc
tggtccaagctggcggcctgggtcgagtcggaccaggtggcctattacatcgatgatgct
ccggtctcttccgatgcggcctacgatgccaggatgcgctgtctccaggaattggagtca
agcttccccagtctggacaccccccagtctccgacccaccgggtgggcggaaccttctcc
aacgatttcacctccgttcgtcatccctcccggatgctcagcctggacgacgtattcagc
atcaacgaactccgccagtggtacgacggaatccgcaaggatctggattggcccgaagac
aaggccctcgccatgaccagcgaggtcaagatcgacgggctggccctgaacctcctctac
cacaatggggttctggagcaggggctgacccggggagacggggtgacaggagaggacatc
accctgaacgtccgaaccattcagaccattccgcagaacctgtcagggccggccgaggac
atccccgagtttgtggaggtccgtggcgaggtcttcatgcggttcgacgatttccaggcc
ctgaatgagcagcaggcgaaggagggcaaacctccttttgccaatccgcgcaacgccgcc
gccgggtcgctgcggcagaaggacccccgcattacggcaacccgccgactgagcttctac
gcccatggtatgggctccctgcggtggggggcggcccaccccaaggggtcacatgatgag
gtcatcgaccagtcccaggcctatgggctctacaggcagtgggggattccgatctccccc
cacaacagggtcgttgcctccttcgatcagattcttgacatgatcgactactacggacag
caccgcaacgacatcgagcatgccctggacggcatcgtggtcaagcttcaggacagggac
cttcagcgcaggctgggtaccacctcccgtgcaccccgctgggccgtcgcctacaagtat
ccgcccgaggaagtcaatacgagacttctggatatcaccgtccaggtgggcaggaccggg
cgaatcaccccggtggccatcctgacccctgtctccgtggccggttccacggtctcccga
accaccctccataacgcctctgaggtcaagcgtaaggggattctgattggcgacacggtc
gtggtccgtaaggccggtgacgtgattcccgagctggtcggtcccgtcatggaggccagg
aagggacgggaaaaggacctgaaatccttcgtcatgcccgagacctgccccagctgtggg
gcccgcctggccccggccaaggagggggacgtggatatccgctgccccaacgtggagtca
tgccccgcccagctgactgagcgtgtcatccatatggcctcccggaaggcgctggatatc
gagcacctgggggagcagagcgccatcgccctgaccaaccccgatgagaaccgccctgac
tccgtcgatgtctatgctcccgaattgcgtgaggtcctggtggaccagggcgggcaggcg
gcgccctatcagcccgcacccgatctggagcttcctccccggcagagcccggttctgacc
agtgaggctggcctgttcgacctgaaggtcgatgacctgcgccacgtatatgtctggcgt
gaggttcccctgatggagcaggtcgaggtggaggggaaggatgggcctagcaccagcaag
cgtcgtgtcggaggcagtggtctctggtaccgggtgccggccttctacaacctccccaag
agcgaccaggctgcccaaggtgacagggccatgaacagtcacgaggtccaggcggaggat
gccgtcctgggcaaggccggtgcagaaccttcccgaaccactttgcagatgcttcaggaa
atcgacaaggcccgacatgccgacctgtggcgggtcctggttgccttgtccatacggcac
ctcggccccacctcggcacgggccatagccacccgcttcccctccctggatgccattgag
catgccgggatcgatgaactgtcggagctggacggggtcggccccgagatcgcctcctcc
atagtcgattggttctccggcgcccgccagccgggtgactggcgtgggaagattctggat
gcctggaaagcggatggtgtggggtcccatgtggagcgcagcaccaagccccagaccctg
aagggtatgacggttgtggtgaccggaagtctggaggacttctcccgggactcggccaag
gaggccatagtcgagcgcgggggcagggcctcggggtcggtcagcaagaagaccacctat
gttgtggtcggggacagccccggttccaaggcggagaaggctgagagccttggtgtgccc
atccttgacgaggcggccttccaccgtctcctggatacaggcagtcccgatgggcaggct
gaccaggccgagggctga
DBGET
integrated database retrieval system
