KEGG   Bdellovibrio sp. NC01: DOE51_00285
Entry
DOE51_00285       CDS       T06360                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bdc  Bdellovibrio sp. NC01
Pathway
bdc03030  DNA replication
bdc03410  Base excision repair
bdc03420  Nucleotide excision repair
bdc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bdc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DOE51_00285
   03410 Base excision repair
    DOE51_00285
   03420 Nucleotide excision repair
    DOE51_00285
   03430 Mismatch repair
    DOE51_00285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bdc03032]
    DOE51_00285
   03400 DNA repair and recombination proteins [BR:bdc03400]
    DOE51_00285
Enzymes [BR:bdc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DOE51_00285
DNA replication proteins [BR:bdc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DOE51_00285
DNA repair and recombination proteins [BR:bdc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DOE51_00285
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DOE51_00285
   MMR (mismatch excision repair)
    DNA ligase
     DOE51_00285
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DOE51_00285
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 HHH_3 Nlig-Ia
Other DBs
NCBI-ProteinID: QDK36148
LinkDB
Position
complement(54508..56514)
AA seq 668 aa
MAQKSAKNRHEELKSIIAKHDHAYHVLDKPIISDFEYDQLFTELLKLEATEEGLDLTDSP
SQRVGAKPLEVFSKVAHRVPMLSLANSYSPEDIFDFDERIKKFLKTDKEIEYFCELKFDG
LSMELVYENGNLVRALTRGDGTVGEDVTQNIKTIKSIPLKLGKGAPEVLEVRGEVLMFKE
DFARLNENQQENGQQTFANPRNAAAGSMRQLDPRITASRPLKFFAYALGHTEGITFKTQE
NIQETFAEYGIPTALKSAPDLVQVAKGPQEVVDFYHRIEKVRPKLPFDIDGVVIKVNSLR
LQDDLGLVARSPRWATAAKFKPEQATTVVEDINVQVGRTGALTPVAIMTPVKVGGVTVTN
ATLHNQDEIDRKDVRIGDTVVIQRAGDVIPEVVSVVLEKRPKNSKPFTIPSKCPACGSEV
EKLEGEVVTRCVNPLCIAQVKESLKHFVARRAMNIDKVGDRLIETLVDAQLLTKFSDFYR
LTKEDILSLDRQGDKSAENIISSIDKSKTPPLARFIFALGIRFVGEQTGKLLADHFVTIE
KFLEASEEELLQVPEIGPKVAKSIIEWTSNKRLVKEVHEMIKLGVNITNPVRSTEGSLSG
MSFLITGTLPVKRDDAKDIIEKNGGKILGSVSSKLNFLVVGDDPGSKVDKAQSLGVKIIS
WDELQKML
NT seq 2007 nt   +upstreamnt  +downstreamnt
atggcccaaaaaagtgcaaagaatcgtcacgaagaacttaaaagcatcatcgcaaagcat
gatcacgcttatcacgtgctcgacaaacccattatttcggatttcgagtatgaccaactc
tttactgagcttttgaaactcgaagccactgaagagggcctcgatctaacggattcacct
tcacaacgtgtcggggcaaaaccgttggaggtttttagcaaagttgcacatagagttcca
atgctttctttggcgaatagctattctcccgaagatatttttgattttgatgaacgtatt
aaaaagtttttgaagaccgataaggagattgaatacttctgcgaattaaaattcgacggt
ctttcgatggaacttgtctatgagaacggcaacttagttcgtgcgctcactcgtggggac
ggaactgttggtgaagatgtcactcaaaacatcaagaccattaaaagtattccattaaaa
cttggcaaaggtgctccagaggttcttgaagtgcgtggcgaagttctaatgttcaaagaa
gacttcgctcgcctgaatgaaaatcagcaagaaaatggtcaacaaactttcgcgaatcca
agaaatgcagcggcgggttcgatgcgccaacttgatccgcgcatcacagcgtctcgtccg
ttgaaattttttgcgtatgccttgggtcacactgaaggcatcacatttaaaactcaggaa
aatattcaggaaacgtttgcagagtacggtattcccacagctttgaaatccgcacctgac
ttggtgcaagtggcgaagggaccgcaagaggttgtcgacttctatcatcgtatcgaaaaa
gtcagacctaaacttccgtttgatattgatggcgtagtgatcaaagttaattcgctgcgc
ctgcaagacgatctgggtttggttgcgcgcagtccgcgctgggcaacggctgcgaaattt
aaaccagaacaagcaacaactgtggttgaagatatcaacgtgcaagtaggtcgtacgggt
gcgctgactccggttgcgattatgacaccggttaaagtcggtggtgtcaccgtaaccaac
gcaactttgcacaatcaggacgagatcgatcgcaaagacgtgcgtatcggtgacaccgtt
gtcatccagcgcgcgggtgatgtgattcccgaagttgtatctgtcgttttagaaaagcgt
ccaaagaacagtaagccctttaccattccttcaaaatgtcctgcctgtggttcagaagtt
gaaaaacttgaaggcgaagtggttactcgttgtgtgaatccgctatgtatcgcgcaagtg
aaagaatcgttgaaacatttcgtcgcaagacgcgcgatgaacattgataaagtcggcgat
cgtttgattgaaactttggtggatgcacagttactgacaaaattttccgatttctatcgc
ctgacaaaagaagacattctgtctttggaccgccaaggtgataaatccgctgaaaacatc
attagcagtatcgataaaagtaaaacaccgcctttggcgcgttttatttttgcgttgggc
atccgtttcgtcggcgaacaaaccggcaaactcttagccgatcattttgttactattgaa
aagtttttggaggcttcggaagaagaacttctgcaagttccagaaatcggtcctaaggtt
gcaaaatcaatcatcgagtggacttccaacaaacgtttggtgaaggaagtacatgaaatg
attaagcttggtgtgaacataacgaacccggtgcgttcaaccgaaggctctctttcaggt
atgagtttcctgatcacgggcacgttgccggtgaagcgtgacgatgccaaagacatcatt
gaaaagaacggcggcaagattctaggttcggtgtcttcgaaattaaacttcttagttgtg
ggtgatgacccgggatcgaaagtcgataaagcacaaagcttgggcgtaaagatcatctct
tgggatgaactacaaaagatgctgtag

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