Burkholderia diffusa: WI26_09605
Help
Entry
WI26_09605 CDS
T04698
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bdf
Burkholderia diffusa
Pathway
bdf03030
DNA replication
bdf03410
Base excision repair
bdf03420
Nucleotide excision repair
bdf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WI26_09605 (ligA)
03410 Base excision repair
WI26_09605 (ligA)
03420 Nucleotide excision repair
WI26_09605 (ligA)
03430 Mismatch repair
WI26_09605 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdf03032
]
WI26_09605 (ligA)
03400 DNA repair and recombination proteins [BR:
bdf03400
]
WI26_09605 (ligA)
Enzymes [BR:
bdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WI26_09605 (ligA)
DNA replication proteins [BR:
bdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WI26_09605 (ligA)
DNA repair and recombination proteins [BR:
bdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WI26_09605 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WI26_09605 (ligA)
MMR (mismatch excision repair)
DNA ligase
WI26_09605 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WI26_09605 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
5_3_exonuc
Mst1_SARAH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AOI57846
LinkDB
All DBs
Position
1:complement(2085521..2087596)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPE
LVTPDSPTQRVGGEVASGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALDKTTDLAGS
VTDPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGRH
VPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
TYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVYGADGLLGFFRKIGEKRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLDPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGS
DAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgtgccgcgtggctg
cgcgatcaactcgagcgggcgaactacgcctattacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctctttggcgagctgcagcagctcgaagccgatcatcccgaa
ctcgtgacgcccgattcaccgacgcagcgcgtcggcggcgaagtggcgagcggtttcacg
ccggtcgtccatgacgcgccgatgctgtcgctgaacaatggcttcgccgacgaggacatc
gtcgcgttcgacaagcgcgtcgccgatgcgctcgacaagacgaccgatctcgccggctcg
gtgacggaccccgtcgaatacgcatgcgagctgaagttcgacggcctcgcgatctcgctg
cgctacgagcgcggcgtgttcgtgcaggcatcgacgcgcggcgacggcacgaccggcgag
gacgtgacggagaacgtccgcacgatccgctcgatcccgctgaagctgaaggggcggcac
gtgccggccctgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgtgcggccgagcagcgcgaattcgcgaatccgcgcaacgcggcg
gccggcagcctgcgtcagctcgacccgaagatcaccgcgcagcgtccgttgtcgttcttc
acgtacgggatcggcgtgcttgacgggatgccgatgccggatacgcacagcgcgctgctc
gactggtacgagtcgctcggcctgccggtgaaccgagagcgcgcggtcgtgtacggcgcc
gacggcctgctcggtttcttccgcaagatcggtgagaagcgcgaatcgctgccgtacgac
atcgacggcgtcgtctacaaggtcaaccggcgcgacgagcaggaccgcctcggcttcgtg
tcgcgcgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtcgcacgtctc
gagccggtgttcgtcggcggtgccacggtaaccaacgcgacgctgcacaacgaggatgaa
gtgcgccgcaaggacatccggatcggcgataccgtgatcgtgcggcgcgcgggcgacgtg
atccccgaagtcgtcggcgcggtgctcgaccgccggccggccgatgcggccgagttcgtg
atgccgaccgagtgcccggtgtgcggctcgaagatcgagcgcctgcccgacgaagcgatc
gcgcgctgcacgggcggcctgttctgcccggcccagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgatcagctcgtc
gaactgaacctcgtgcgcacgccggccgacctgttcaatctcggtttcgcgacgctcgcg
gaactcgaccggttcgccgagaagtccgcacagaatctgctcgactcgctcgaaaaggcg
aagcacacgacgctcgcgcgcttcatctacgggctcgggatccgccatgtcggcgaatcg
accgcgaaggatctcgcgaagcatttcggatcgctggacccgatcatggacgcgtcgatc
gaggaactgctcgaagtgaacgacgtcggaccgatcgtggccgagtcgcttcatcagttc
ttcgcggaagagcacaaccgcacggtgatcgagcagctgcgtgcgcccggcaaggtcacg
tggcccgaaggcccgcccgcgccgaaggcgccgcagggcgtgctcgccgggaagaccgtc
gtgctgacgggcacgctgccgacgctcacgcgcgacgcggcgaaggaaatgctcgaagcc
gcgggcgcgaaagtcgcgggttcggtatcgaagaagacggattacgtggtcgcgggctct
gacgccggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagac
ggactgcaccaactcctggagggcaacacgccatga
DBGET
integrated database retrieval system
