Bradyrhizobium daqingense: LPJ38_14430
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Entry
LPJ38_14430 CDS
T07756
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03030
DNA replication
bdg03410
Base excision repair
bdg03420
Nucleotide excision repair
bdg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPJ38_14430 (ligA)
03410 Base excision repair
LPJ38_14430 (ligA)
03420 Nucleotide excision repair
LPJ38_14430 (ligA)
03430 Mismatch repair
LPJ38_14430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdg03032
]
LPJ38_14430 (ligA)
03400 DNA repair and recombination proteins [BR:
bdg03400
]
LPJ38_14430 (ligA)
Enzymes [BR:
bdg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPJ38_14430 (ligA)
DNA replication proteins [BR:
bdg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPJ38_14430 (ligA)
DNA repair and recombination proteins [BR:
bdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPJ38_14430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPJ38_14430 (ligA)
MMR (mismatch excision repair)
DNA ligase
LPJ38_14430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPJ38_14430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UFS91871
LinkDB
All DBs
Position
3014080..3016227
Genome browser
AA seq
715 aa
AA seq
DB search
MARAAKSKPLRDVADLTKAQAKVEHMRLSLEIEGHNERYYQEDAPTVTDAEYDALRQRLN
AIETRFPEFVSADSPSQKVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIVRFLK
LDDDKVDFSAEPKIDGLSMSLRYKGGELVTAATRGDGAVGEDVTANIRTLEDVPQKLKGR
NVPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGF
FAYAWGEMSAMPEATQSGMIGWFERCGFKTNPLTRLCHSVEELLAFHHAIEEQRARLDYD
IDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLRDIEIQVGRTGSFTPVGKL
EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVL
DKRPKTAKEFHFPKKCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFVSR
RAFDIDGLGEKQLQYFFDEGWVKEPADIFTLEKRNSKLKLEEIEGYGATSVRNLFGAIES
RRRIALERFVYALGMRHVGETTALALARGYGSWDAFHDACLKVAKGDEEAMADMDALDQI
GDTVIKSIADYFGESHNRGIVERLTGEVEIVDAEKPKSNSAVAGKTVVFTGSLEKMTRDE
AKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLTGE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagcagcaaaatcgaaaccgcttcgcgacgtcgccgatctcaccaaggcgcag
gccaaggtcgagcatatgcggttgtcgctcgagatcgaggggcacaacgagcgctactat
caggaggatgcgcccaccgtcacggatgcggaatacgacgctctgcgtcagcgtctcaac
gcgatcgagacgcgtttcccggagttcgtcagcgcggactcgccctcacagaaggtcggc
gcggcaccctcggggcgcttcaagaaggtgcggcacgcggtgccgatgctgtcgctcgac
aatgccttcgcggaagaggacgtgcgcgacttcgtcggccggatcgtgcgcttcctgaag
ctcgacgacgacaaggtggatttctccgccgagccgaagatcgacggcctctcgatgtcg
ctgcgctacaagggcggcgagctcgtcaccgcggcgacgcgtggcgacggcgcggtgggg
gaggacgtcaccgccaacatccgcacgctcgaagacgtgccgcagaagctgaaagggcgc
aacgtccctgatatctgcgaggtgcgcggcgaggtctacatgaccaagaaggcgttcctg
gcgctcaacgagcggcagaaggccgccggtgacaccatcttcgccaatccgcgcaactct
gccgcaggctcgctgcggcagaaggatccgaccatcaccgcctcgcgtccgctcggcttc
ttcgcctatgcctggggcgagatgagcgcgatgcccgaggcgacgcagagcggcatgatc
ggctggttcgagcgctgcggcttcaagaccaatccgctgaccagactctgccattccgtc
gaggagctgctcgccttccatcatgcgatcgaggagcagcgcgccaggctcgactacgac
atcgacggcgtcgtctacaaggtcgaccgcatcgactggcaggagcggctcggtttcgtc
tcgcgcacgccgcgctggggcatcgcgcacaaattcccggccgagcgtgccatgaccgtg
ctgcgcgacatcgagatccaggtcggccgcaccggctcattcacgccggtcggcaagctc
gagcccgtcggcgtcggcggcgtcatcgtgcagaacgtcacgctgcacaacgaggactac
atcaagggcatcggcaacaagggcgaggtattgcgcgagggccgcgacatcaggatcggc
gacaccgtcgtgatccagcgcgccggcgacgtcatcccgcaggtggtcgacgtcgtgctc
gacaagcggccgaagacggcgaaggaattccacttcccgaagaagtgcccgtgtccgctg
cacaccgacgtcacgcgcgaggagacggcggcgggcgaagagggctcgcgtgcgcgctgc
accggcgagttcgcctgcccctatcagaagatcgagcacctcaagctgttcgtgtcgcgc
cgcgccttcgacatcgacggtctcggcgaaaagcagctccagtatttcttcgatgagggg
tgggtgaaggagcccgcggacatcttcacgctggagaagcgcaattcgaagctcaagctc
gaagagatcgagggttatggcgcaacctcggtgcgcaacctgtttggcgccatcgagagc
cggcgcagaatcgcgctagagcgcttcgtctatgcgctcggcatgcgccatgtcggcgag
accacggcgttggcgctggcgcgcggctacggctcctgggacgccttccatgacgcctgc
ctgaaggtcgccaagggcgacgaggaagcgatggcggacatggacgcgctcgaccagatc
ggcgacaccgtgatcaagagcatcgccgattatttcggcgagagccacaatcgcggcatc
gtcgagcggctgaccggggaggtcgagatcgtcgacgccgagaagccgaagagcaactca
gccgtcgccggcaagaccgtggtgttcaccggctcgttggagaaaatgacgcgggatgaa
gcgaaggcgactgcggaacggttgggtgcaaaagtgtcgggctcggtgtcgaagaagacc
gaccttgtcgtcgccggccccggcgcaggctcgaagctcgcggaagccaacaagcacggc
gtcaaggtgttgaccgaggacgagtggctgaagctgaccggggagtga
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