Brachypodium distachyon (stiff brome): 100822673
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Entry
100822673 CDS
T01717
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100822673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100822673
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100822673
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
Arf
AAA_15
SMC_N
ORC-CDC6-like
AAA_23
Zeta_toxin
AAA_25
AAA
nSTAND3
AAA_28
AAA_24
ATP-synt_ab
AAA_30
Motif
Other DBs
NCBI-GeneID:
100822673
NCBI-ProteinID:
XP_003558044
UniProt:
I1H634
LinkDB
All DBs
Position
1:complement(63516307..63519926)
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AA seq
311 aa
AA seq
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MAPTVEIRDLTFTYPGIDGRPPPGAPPLIENVCFSLDAGQRCLLVGSNGAGKTTILKILG
GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
GVTGVDSRRRDELIKILDIDLGWRMHKASDGQRRRVQICMGLLKPFKALLLDEITVDLDV
LARANLLTYLKKECEERGATIIYATHIFDGLDDWPTHIVYIAHGKLQLALPLEKVKEMSQ
LSLMRTVESWLRKERDEDRRKRKERKEKGLPAFDKVIEGSRVVNNGWAAGRLTSTIAGEE
NFFLSSNSVLR
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacggtggagatcagggatctcaccttcacctacccgggcatcgacggccgg
ccccctcctggcgcgccgccgctcattgagaacgtctgcttctccctcgacgccggtcag
cgctgcctcctcgtcggctccaacggcgcaggcaagacgacgatactgaagatcctgggc
gggaagcacatggtggatccgagcatggtgcgggtcctgggcaggtccgccttccacgac
acggcgctcacctcctccggcgatctctgctacctcggcggtgagtggagacgcgatgtt
gcctttgcgggctaccaggtgaatatacagatggacatttcggcagagaagatgatattt
ggtgtcactggtgttgattctcggaggagagatgaacttatcaagattttggatattgac
cttggctggcgcatgcacaaagcatcagatggtcagaggagaagagtccagatttgtatg
ggacttctcaagccattcaaggctcttcttcttgatgagatcacagtcgaccttgatgtg
ttggcaagagcaaatctattgacatatctaaagaaggaatgtgaggaacgaggtgcaaca
atcatatacgcgacacatatttttgatggccttgatgactggcctacacacattgtctac
attgctcatgggaagttgcaactagcactgcctttagaaaaggtgaaagaaatgagccag
ttatctctcatgagaacagtcgagagctggctgaggaaagagagggacgaggacaggagg
aagagaaaggagcggaaggagaaaggcctcccggcattcgacaaggttattgaggggagt
agagtagtgaacaacgggtgggcagcaggaaggctcacctcaaccatagcaggcgaagag
aacttctttctaagttcaaatagtgttcttcggtag
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