Brachypodium distachyon (stiff brome): 100829204
Help
Entry
100829204 CDS
T01717
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC100829204
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100829204
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100829204
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100829204
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100829204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
Motif
Other DBs
NCBI-GeneID:
100829204
NCBI-ProteinID:
XP_024317203
LinkDB
All DBs
Position
3:complement(36737150..36763139)
Genome browser
AA seq
1562 aa
AA seq
DB search
MASSGSRKWALVKHEHCRFESKVYRFQILLPNGMSTSLRLSDPGEEMWIQDFIQHIRMEV
DNAPQDGVGRREVGWNCEIYLKDLHDRKITEKVNFSDFLNKSINILTLHDGEDFVGAFQN
MWDLTPPTEMLQELPAEYSIESALADLVDNSLQAVWSNGKQERKLIRITIDKEKMVIMDT
GRGMDGSDENSISKWGTIGSSNHRVFRNKGIGGEAPYLVPFFGMFGYGGTIASMHLGRTA
IVSSKTKESRKVFTLHLPREALLKKSSSKLSWKTAGGFRDPSKEELTLSPHQSFTQVEIH
GLRRHLEVAKLPRVFEGHLFSIYTGFVLNIFIIMHSEVCYDEDNGSMNTRTPVEFEVNGV
NLAEIQESEVALTNLYSSNGPDFILHVKFSCSSTIAAASVEAHARVKCAYFPIVKGKESI
DSILEMLSKNAXGAKENFDKFSRVSIRRLGRLLPDARWGPLPFMEPKQTKGKKAEFFKRC
CKRLKCFVDTDAGFYPTFSKTDLAQHNHFTKALRFLGCSSSNDRSVEEVNIDIRKGGRSL
GCKQLEKQYHDWIKEMHDKYDVEMDGGDDEHTVIINPTNKERLGISKDVKVIRVYNSVSR
KGKTWRRGDHLKIQPGVMARMKTNFYALKNNFYATLEFVVVEGLAGDVCGEARLICRSIE
FSDVQGCLLEEGQDGMNLDIQECVSFPVSMIDDDKCQIMDDNSWSQFLKKKKEKAPACIE
VLKNLEGDALAIGGDLPFEEVVMAGYQHPCEIVAVIRPQIYTANCSSTLDNRYIVKDDEL
EMIMEINHLPGSEDHLDAKLVDRVFKKPSSHNIINGLYIFPLSKYSSIFTKSGRFQLGMP
VRCLVVRSTDFYGNEIPFLDVPKVVITILDGDDILAQVDDMKMELSSDSLTLNVMDFLFK
TSKLDMIRPKCEAMLRISLSDNEISDVFPCKVKPGFASTVKMDMSLYFENNLTPGSVIDD
VLLEVFDHCDNHVEEGTELVVTMVGLSFIDKHGPVRKVNSEGFVDLSGLLKVVNGFGSQA
CLMISRHEKKIFAKTFKIATRELTAVKVPQSCQAGTYLQNIIFKVFYSDGLIDEAIDGPL
HTLSIRLNEAELVEGARYAFEHGRCVVSRLAVPREPGTVSFLAYHTHFPDLKTVFQLHVY
ACDLVRVNLEDEAGPIFSHPTSSVSSQNLLLPSQLVSYQSNNLAAYVEDVMGNISDEIEK
LDSKICSEEKLINFLDCQKKSLENEIFNRKDEIGPIVESCSGAKELTRHKIQESSGTAAS
VLCHLSSGKGYEPGKCFREDVIGIVALLGTVAHKKMSRMLSVYLGEDNMLAVVCMTRDAA
NYIEKYDTDGNVDVHFGIHREAANLGIPINRRFHTFCLDAIRPYEGDLFQNKQKNLALPF
PHYETPKGFCGFAVNMIDISADNLNKITSSGHGLRETLFYSLFGELQVYETRNDMLQAIP
YLKNGAISLDGGVIKGDGTWLLGDSDPEVTFPFVPNGPDALEDLQDLPLKIKIMLGKKAH
LKAVEAKIRRVEESRQKSVRKRNKKERKVDEISGAMSQQPCGSQPVPLAIGLSRTNNWGA
HR
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagtggatccagaaaatgggctttagtaaagcatgaacactgccggtttgaa
agcaaggtctaccggtttcagattctgttgcctaatggcatgagcaccagccttaggctg
tctgatcctggagaagagatgtggattcaggacttcatacagcatattaggatggaggtg
gataatgcgccccaagatggcgtgggaaggcgggaagttggttggaattgcgaaatttat
ctgaaggacctgcatgataggaaaataacagagaaagtcaacttcagtgattttctcaat
aagagtattaatatattaacgctccatgatggtgaagacttcgttggagcatttcagaat
atgtgggaccttactcctccgactgaaatgcttcaagagcttccagcagagtatagcatt
gagagtgctctcgcagacctcgttgacaattcactacaggctgtgtggtcaaatggtaaa
caagaaagaaagttaatcaggataacaattgacaaagaaaagatggtgattatggatact
ggtagggggatggatggttcagatgagaattctatctctaaatggggtacaataggttcg
tctaaccatagagtatttcggaataaaggtatcggtggggaagctccatacttagtgcct
ttctttggcatgtttggttatggtggaactatcgcctcgatgcatcttgggagaactgcc
atagtttcttcgaaaactaaggaatcaaggaaggtgtttaccttgcatcttcccagagag
gctttactgaagaagtcctcgtctaaactcagctggaagactgctggaggatttagagat
ccatcaaaagaggagttaacgctttcgccacatcagagttttacccaggttgaaattcat
gggttgcgtaggcacttggaggtagccaaactcccaagagtttttgaaggacatttattt
tccatatatacaggttttgttcttaacatattcataatcatgcattctgaagtatgctat
gatgaggataatggatctatgaatacaaggacgccagttgagtttgaggtgaatggtgta
aatctagcagaaatacaggaaagtgaagtggcccttactaatttgtactcttctaacggt
cctgatttcattctgcatgtaaaattttcatgttcttcaacaattgcagcagctagtgtc
gaagcccatgcacgagtgaagtgtgcatactttccaatcgtcaagggaaaagagtctatt
gattctattttggaaatgttaagcaaaaatgccnccggggcaaaagaaaactttgacaag
ttttcacgtgtatcaatccgtcgacttggacggttactccctgatgctagatggggtcct
cttccttttatggaacctaaacagactaaaggtaaaaaagctgaattcttcaagcgatgc
tgtaagaggttgaaatgttttgttgatacggatgcaggtttttaccctaccttttccaag
actgatttagcacagcacaatcattttacgaaggcactacggttcttaggttgcagttct
tccaatgaccgctcagttgaggaggttaacattgatattcgtaaaggtggaagatcacta
ggttgtaagcagttggagaagcaatatcatgattggattaaggaaatgcatgacaagtat
gacgtggaaatggacggtggggatgatgaacatactgttattatcaacccaaccaacaag
gagcgacttggtatatctaaagatgtcaaagtaattagagtttacaactcagttagcaga
aaaggaaaaacatggagaagaggagatcatctgaaaatccaaccaggagtgatggctaga
atgaaaactaatttctatgcattaaaaaataacttctatgcaacattggagttcgttgtt
gttgaaggacttgcaggagatgtttgtggtgaagctcgacttatatgcaggtctattgag
ttctctgatgtgcaaggttgcttacttgaggaaggtcaagatggtatgaaccttgatatc
caggaatgtgtctccttccctgtgagcatgatagatgatgataagtgccaaataatggat
gataattcttggagtcaatttcttaaaaagaaaaaggagaaggctccagcatgtattgag
gtcctaaaaaatttggaaggcgatgctcttgctataggaggggatctaccatttgaagaa
gtagtaatggctggttaccaacatccatgtgaaattgtagctgttatccggccacaaatt
tatactgccaactgctccagcacccttgacaatagatatattgtgaaggatgatgagcta
gagatgataatggagattaatcatttgcctggaagtgaagaccatcttgatgcaaagctt
gttgatagggtgttcaagaaaccctcgtcgcataatatcataaatggactgtatatcttt
ccgttgagcaaatattcaagcatctttactaaatctggtagattccagcttgggatgcca
gttagatgtctagttgttagaagcacagatttttatggaaacgaaattccgtttcttgat
gtacctaaggtggtcataaccattcttgacggtgatgatattctggctcaagttgatgat
atgaaaatggaactttcatcagattcgctgactctgaatgttatggattttctgttcaaa
accagcaaattggacatgataaggccaaaatgcgaagctatgttaaggatatctttgtct
gacaatgaaatctctgatgtttttccatgtaaagttaagccaggctttgcatcaacagtt
aagatggatatgtccctttactttgaaaacaatttaactcctggaagtgttattgatgat
gtccttctagaggtgtttgaccattgtgacaatcacgttgaagaagggacagaacttgtc
gttactatggttggactctcctttatagataaacatgggcctgttcgaaaggttaatagc
gaggggtttgttgacctatctggactacttaaagttgttaatggatttggttcccaagct
tgcttaatgatttctcgtcatgagaaaaagattttcgctaaaacatttaaaattgccacc
agggagttaacagctgtcaaggtcccacagagttgtcaagctggcacctatttgcaaaat
attatatttaaagttttttatagtgatggactgattgacgaggcaatagatggacccctc
catacactgagcatcaggttgaatgaagcagaacttgtcgaaggagcacgatatgcattt
gaacatggaagatgtgttgtttctcgtttggcggttcctcgtgaaccagggacagtcagt
tttcttgcatatcatacacattttcctgatctgaaaacagtatttcagcttcatgtttat
gcttgtgatttggtgcgggtcaacttggaggatgaagctggacctattttcagccaccca
acttcatctgtatcaagtcaaaatcttttacttccaagtcaacttgtatcttatcaatct
aacaatcttgctgcatatgttgaagatgttatggggaatatttctgatgaaattgaaaaa
cttgattccaagatatgttctgaagaaaaactgattaattttcttgattgtcagaagaaa
tctttggagaatgaaatttttaatcggaaagatgagattggccctatagttgaatcatgc
agtggtgcaaaagagttaacccgtcataaaattcaggagagcagtggtactgctgcttct
gttttatgccatctctccagtggtaaaggctatgaaccaggaaaatgtttcagggaggat
gttattggtattgttgctcttctcggaaccgtcgcacacaaaaaaatgagtaggatgctt
tctgtgtatcttggtgaagacaacatgcttgcagtggtttgcatgacccgggacgctgct
aattacattgagaaatatgacactgatggaaatgtggatgttcactttggtattcatcgg
gaagcagctaatctaggaattcccataaacaggagatttcataccttttgcctggatgca
ataaggccatatgaaggagacctctttcagaacaagcagaaaaatcttgctctgccgttt
ccacattatgagacccccaagggattttgtgggttcgcggtcaacatgattgatatttct
gcagataacttgaacaaaatcacaagtagtggacacggtctccgtgaaactttattttat
agtctctttggggagcttcaagtttatgaaacacgaaatgacatgttgcaagctattcct
tatttgaaaaatggggctatatctttggatggtggtgttataaagggtgatggtacgtgg
cttcttggtgacagtgatccggaggtcacatttccttttgtccccaatggtcccgacgct
ctggaagacttgcaggatttgcccttaaaaataaaaattatgcttggcaagaaggctcat
ttgaaagcagtggaagccaagatacggcgagtggaagagagccggcagaaatcggtgagg
aagcgcaacaagaaggagcgcaaagtcgacgagatatcgggagcgatgagccagcagccc
tgtggcagccagcctgttccccttgcaattggcctgtcgcgaaccaacaattggggtgca
cacagatga
DBGET
integrated database retrieval system
