Brachypodium distachyon (stiff brome): 100834476
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Entry
100834476 CDS
T01717
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100834476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100834476
Spliceosome [BR:
bdi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100834476
Complex C
U5 SnRNP specific factors
100834476
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
EF-G_D2
Septin
Motif
Other DBs
NCBI-GeneID:
100834476
NCBI-ProteinID:
XP_003563643
UniProt:
I1GXF6
LinkDB
All DBs
Position
1:32117276..32122712
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AA seq
995 aa
AA seq
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MDDSLYDEFGNYIGPELADSDADDSDAAASPSPSPSRSPSPARSLSGSPNSRRPAALMDV
DDDDYADASPNAVVLAEDKKYYPTAEEVYGPGVEALVMDEDEQALEQPIVAPPRVVKFEV
GTRAGATSTYASTDFVLGLAANPLLVRNVALVGHLQHGKTVFMDMLVEQTHEVDTFDSEG
ERHVRFTDTRVDEQERRVSIKAVPMSLVLEGGNGKSYLCNIMDTPGHVNFSDEMTAALRL
ADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPNDAYFKIRHT
LDTINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFTLQSFAHLYGKIHGIPFDHEK
FASRLWGDLYYHHGSRTFKKKPPAEGANRSFIEFILEPLYKIYSQVVGEQKSLVESTLAD
LGVTLSNAAYKLNVRPLLRLACRSIFGTATGFTDMLVKNIPSVKDAAARKIEHIYTGPQD
SSIVEAMKKCDSNGPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPDD
EEDMTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTATICPMNMDDDVYIFR
PLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD
SIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMLAEPLEKGLAE
DIENGLVSLDSRQKEVTDFFRQRYQWDVLAARSIWAFGPDKQGPNILLDDSLSVEVDKNL
LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYS
AFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVI
ESFGFETDLRYHTQGQAFCVSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTR
RRKGMSEDVSINKFFDEAMMNELAQQAADLHLQMM
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcctctacgacgagttcggcaactatatcggcccggagctcgccgactcc
gacgccgatgactccgacgccgccgcctccccgtccccctcgccgtcccgctccccctcc
ccggcgcgctccctgtcaggctcccccaactcccgccgccccgccgccctcatggacgtc
gacgacgacgactacgccgacgcctccccgaacgccgtcgtcctcgccgaggacaagaag
tactaccccaccgccgaggaggtctacggcccgggcgtcgaggcgctcgtcatggacgaa
gatgagcaggcgctcgagcagcccatcgtggcgccgccgcgcgtggtgaagttcgaggtc
ggcacccgagctggcgccacctccacctacgcttccactgatttcgtccttgggctcgct
gccaacccgctgctggtccgcaatgtggctctcgtgggccacctgcagcacgggaagacg
gtgttcatggacatgctcgtggagcagacgcacgaggtggacacgtttgactccgagggc
gagcgccatgtgcggttcacggacacccgggtggacgagcaggagcgaagggtctccata
aaggctgtgccgatgtcactcgtgctcgaggggggcaatggcaagtcgtatctctgcaac
atcatggacacgcctgggcatgtcaacttttctgatgagatgactgctgcgctccggctc
gcggatggagctgtgcttgttgttgatgctgccgagggcgtcatggtaaatactgagcgg
gcgattcgtcatgcaatccaagaaagacttcccattgttgttgtgattaacaaggttgac
agactgataacagagctaaagctgcccccgaatgacgcatatttcaaaatacggcataca
ctggacacaatcaacgatcttatctcatcttgttctaccacagtaggtggcactcaactg
gtagacccagctgctggaaatgtttgttttgcgagtggttctgctggctggtcttttacc
ttgcaatcttttgcacatctttatggaaagattcatgggattccatttgaccatgagaaa
tttgcttctcgtctatggggagatttgtattatcaccatggctccagaaccttcaaaaag
aagccgccagcagaaggagctaatagatcgttcattgagttcatccttgagcctctgtac
aaaatctatagtcaagttgttggagagcaaaagagccttgtcgaatcaactcttgctgac
ttgggtgtgacgctgagcaatgcagcttacaagcttaacgttaggcctttgctaagactt
gcttgccgctcaatttttggcactgctactggctttactgacatgttagtgaaaaacatc
ccctctgtgaaggatgctgctgcaaggaagatagaacacatatacactggtccacaggat
tcctccatcgtggaagcgatgaagaaatgtgattctaatggccctcttatggtcaatgtt
acaaaactgtatcctaaatctgactgtagtgtctttgatgcctttggacgagtttatagt
ggcacaatacagactggtcagactgtccgggtccttggagaaggctactctcctgatgat
gaagaggatatgactgtcaaagaggtcaccaagttgtgggtttatcaggcacggtaccgt
gttccaattagtaaagcccctgctggttcctgggttcttatcgaaggcgttgacgcatca
atcatgaaaactgcaactatatgtcctatgaacatggatgacgatgtgtacatatttaga
cctttacgtttcaatactttacctgttgtaaaaatagctgcggagcctcttaaccccagt
gagctccctaaaatggtggaaggccttcgtaaaatcagtaaaagctatcctcttgctatt
accaaggtagaagagtcaggagaacacaccatccttgggactggtgagctatatctagat
tctataatgaaggaccttagagagctttactctgaggtagaagtgaaggttgcagatcca
gttgtgacattttgtgaaacagttgttgatacttcttctatgaaatgttttgctgaaaca
cccaacaagagaaacaaaattaccatgctagctgaaccactagagaagggcttggcagaa
gatattgagaatggccttgttagccttgactccaggcagaaagaagtcactgacttcttt
cgccaacgctaccaatgggatgtgcttgcagcaaggtcaatatgggcttttggacctgac
aagcagggtcctaacattctactggatgactcactttcagttgaggtggataagaacttg
ctgaatgcagtcaaagattcaatcgttcaagggtttcagtggggtgctagagaaggtccc
ttgtgtgatgaaccaattaggaatgtcaagttcaagatcttaaatgcaaacattgctcca
gaaccattgcaccgtggtggtggtcaaataattcccacagctcgtcgtgtggtctactca
gcatttctgatggctaatcctcgccttatggagcctgtttattacattgagatccaaact
ccaatcgactgtgtctctgctatatacacggtcctgtcacgacggcgtggccatgtgaca
gccgatgtacccaagccaggcactccaatatacgttgttaaggcatttttacctgttata
gagtcttttggatttgagacagacctcagataccatacccagggacaggccttttgtgtg
tcagtctttgatcactgggctattgttcctggcgatcctcttgacaagagcattgtcctc
cgccctctggaaccagcacctatacaacaccttgcccgtgagttcatggtaaagacgagg
cgaaggaagggcatgagcgaggatgtcagcatcaacaagttctttgacgaagctatgatg
aacgagcttgcacagcaggctgcagacctccacttgcaaatgatgtag
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