Bdellovibrio sp. KM01: HW988_00255
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Entry
HW988_00255 CDS
T08445
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03030
DNA replication
bdk03410
Base excision repair
bdk03420
Nucleotide excision repair
bdk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HW988_00255 (ligA)
03410 Base excision repair
HW988_00255 (ligA)
03420 Nucleotide excision repair
HW988_00255 (ligA)
03430 Mismatch repair
HW988_00255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdk03032
]
HW988_00255 (ligA)
03400 DNA repair and recombination proteins [BR:
bdk03400
]
HW988_00255 (ligA)
Enzymes [BR:
bdk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HW988_00255 (ligA)
DNA replication proteins [BR:
bdk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HW988_00255 (ligA)
DNA repair and recombination proteins [BR:
bdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HW988_00255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HW988_00255 (ligA)
MMR (mismatch excision repair)
DNA ligase
HW988_00255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HW988_00255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Nlig-Ia
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QLY25530
LinkDB
All DBs
Position
complement(49146..51137)
Genome browser
AA seq
663 aa
AA seq
DB search
MSKKRHEELKKIIAEHDHNYYVMDRPAITDYEYDQLFDELLKIEKSEKGLDLSDSPSQRV
GGKVLESFTKATHRLPMLSLANSYSPEDIFEFDERIKKFLGSDKEVEYLCELKFDGLSME
IIYENGQLVRALTRGDGTIGEDVTENIKTIKSIPLKIKNAPEIFEVRGEVLIFKKDFAEL
NDTQQENGQPTFANPRNAAAGSMRQLDSKVAAARPLKFFGYALGMVEGKAFETQEGIQKY
FADHGIPTAIKSNPDLVCLCKGPQEVVEYYHHIEKVRSSLPFDIDGIVIKVNSLRLQDDL
GLVARSPRWATAAKFKPEQATTVIENIHIQVGRTGALTPVAIMKPVKVGGVTVTNSTLHN
QDEIDRKDVRIGDTVIIQRAGDVIPEVVAVVLEKRPKGSKPFLIPEKCPACGSPAHKTEG
EVVTRCTNPLCIAMVKESLKHFVGRRAMNLDKVGDRLIETLVDNKMLTSFSDFYRLTKED
ILSLERQGDKSAENIITSIENSKKPTLARFIFGLGIRFVGEQTAKLLADHFVNIENFLNA
SEEELLQVPEIGPKVATSIREWTSNKKLVKEVHEMIRLGVEITNPVRATEGALSGMSFLI
TGTLPVKRDDAKDVIEKNGGKILSSVSSKLSYLVVGDDPGSKVDKAQTLGVKIISWEDLQ
KMI
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaacgccacgaagagcttaaaaagatcattgctgaacacgaccacaactat
tacgtcatggatcgcccggcgatcaccgactatgagtacgatcagctctttgatgagctt
ttaaagatagaaaagtctgaaaagggattggacctatcagattcaccaagccagcgcgtg
ggtggaaaagttttagaaagtttcaccaaggcaacacatcgcctaccgatgttgtctctt
gccaatagttattctccggaagacatttttgaattcgatgaacgcattaaaaaatttctg
ggttccgacaaagaggtggaatatttgtgcgaacttaagtttgacggtctttcgatggaa
atcatctatgagaacggtcaactggttcgtgcattaactcgtggtgacggtactatcggc
gaggacgttactgaaaatataaaaacgattaaaagcattccattaaagattaagaatgct
ccagaaattttcgaagttcgtggtgaagtattaattttcaaaaaagatttcgctgaactt
aatgatactcaacaagagaatggtcagcccacattcgcaaaccctcgtaatgcggcggct
ggatccatgcgccaactggattctaaagttgcggctgcacgtccgctgaagttctttggt
tatgcgctgggaatggttgagggtaaagcctttgaaacccaagagggcattcaaaaatat
tttgctgatcacggaattcccacagcaatcaaatcaaatcctgacttagtttgcctgtgt
aaggggccgcaagaagtcgttgagtactatcaccacatcgaaaaagttcgatcgtctttg
ccatttgatattgacggcatcgtgatcaaggtaaattctttgcgcttgcaagatgatctg
ggcttagtcgcaagaagtccgcgctgggcaacagctgcgaagtttaagcccgaacaggcg
acgacggtaattgaaaacattcacatacaggttggtcgcaccggagcccttactcccgtt
gctatcatgaagccggtgaaggtgggcggcgtcaccgtcacaaactcaactcttcacaat
caagatgaaattgatcgcaaagatgttcgcattggcgataccgtcatcattcaacgtgcc
ggcgatgtgattccagaagttgtggccgttgtattagaaaaacgccccaaaggaagcaaa
ccattcttgatacctgaaaaatgcccggcctgcggctctccggcacataagaccgagggt
gaagtcgttactcgttgtacaaatccactttgtatcgcgatggtaaaagagtctctaaaa
cacttcgtcggacgtcgtgcgatgaatttggataaagttggtgatcgtctgatcgaaact
ttagttgataataaaatgctaacctccttctctgatttttaccgactgacaaaagaagac
atcctttctttggaacgccaaggagacaagtctgcagaaaatattattaccagcattgag
aacagcaaaaagccaacgcttgccagattcattttcggtttgggaattcgtttcgtcggc
gagcaaactgccaagctgcttgctgaccactttgttaatattgaaaactttttaaacgct
tctgaagaagagctgttgcaagtgccagaaatcgggcccaaggttgcaacttctattcgc
gaatggacgtctaacaaaaagctcgtcaaagaagttcacgaaatgattaggcttggggtg
gaaatcacaaaccccgtgcgcgccaccgaaggtgcactttctggaatgagctttctgatc
acgggcactttgccggtgaagcgtgatgatgccaaagatgtgattgaaaaaaatggtggt
aagattctgagctcagtttcttcaaagctaagctatcttgtcgtcggcgacgacccgggt
tctaaagtcgataaagcacaaaccctgggtgtcaaaatcatctcctgggaagatctacag
aagatgatttag
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