Brevundimonas diminuta: EQG53_09625
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Entry
EQG53_09625 CDS
T05851
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bdm
Brevundimonas diminuta
Pathway
bdm03030
DNA replication
bdm03410
Base excision repair
bdm03420
Nucleotide excision repair
bdm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EQG53_09625 (ligA)
03410 Base excision repair
EQG53_09625 (ligA)
03420 Nucleotide excision repair
EQG53_09625 (ligA)
03430 Mismatch repair
EQG53_09625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdm03032
]
EQG53_09625 (ligA)
03400 DNA repair and recombination proteins [BR:
bdm03400
]
EQG53_09625 (ligA)
Enzymes [BR:
bdm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EQG53_09625 (ligA)
DNA replication proteins [BR:
bdm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EQG53_09625 (ligA)
DNA repair and recombination proteins [BR:
bdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EQG53_09625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EQG53_09625 (ligA)
MMR (mismatch excision repair)
DNA ligase
EQG53_09625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EQG53_09625 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Zn_ribbon_NUD
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QAT14595
UniProt:
A0A410NXL5
LinkDB
All DBs
Position
complement(1913328..1915652)
Genome browser
AA seq
774 aa
AA seq
DB search
MSDLFTPVETLTEAQAREELDRLSAELARHDALYYADAAPEISDADYDDLKRRALDIEAR
FPALSSPVSPSQRVGAPVSTQFAEVRHGVPMLSLDNAFDDGEVRDFVARIARFLKLPGDE
PIAFVAEPKIDGLSASLRYEKGVLVQGATRGDGKTGEDVTANLRTLDSIPQTLAGSGWPD
VIEIRGEVYAPNAAFDAFNAAAEAEGRRTYANPRNFAAGSLRQKDPKITALRPLTFFAYA
WGETSAPFAETQAGALEAFRSWGFQVNDRSARVEGADGLIGVYQTLEANRSRLGYDIDGV
VYKVDRLDWQNRLGFIARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVT
VGGVVVRNATLHNEDEIARKDVRIGDTVVLQRAGDVIPQIVGVVETLRPEGAVPYVFPTV
CPVCGSEAVREGDEVKRRCTGGLICDAQIVERLKHFVSRRAFDIEGLGEKQLIAFHARGW
IKEPADIFRLARDEEKLALLRAEDGYGETSVGNLIAGIDARRVISLDRLIFGLGVREIGE
QTSLVLSRAFGSWTAFRDACMAAASGLASDDWKTLAATHAISTRVLGLMAEAQPPADDPW
PEAPMDQKIALAFPGMAAPARRSLAEISEGWSDLTRWAAVARDEGPSDMLNQIAGVSGVG
PVAAEALAHFFHEPHNLQVVDALLAELERVEDVAAPVTDSPVAGKTVVFTGSLERFTRDE
AKARAESLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVTVLTEDEWLALIS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctcttcacgcccgtcgaaaccctgaccgaagcccaggcgcgcgaagagctg
gatcgcctgtcggccgaactggcgcgtcacgacgccctctactacgccgacgccgcgccc
gagatttccgacgcggactatgacgatctgaagcgccgcgccctcgacatcgaagcccgc
ttcccggcgctctccagccccgtctccccgtcgcaacgcgtcggcgcccccgtctcgacc
cagttcgcagaggtccgccacggcgtgcccatgctgtcgctggacaacgccttcgacgac
ggcgaggtgcgcgacttcgtcgcccgcatcgcccgcttcctcaagctgccgggcgacgaa
ccgatcgccttcgtcgccgagcccaagatcgacggcctctcggccagcctgcgctatgaa
aagggcgtgctggtccagggcgccacgcgcggcgacggcaagacgggcgaggacgtgacc
gccaacctgcgcacgctggacagcatcccccagacgttggccggctcgggctggcccgac
gtcatcgagatccggggcgaggtctacgcccccaacgccgccttcgacgccttcaacgcg
gcggccgaggccgaaggcaggcgcacctacgccaacccccgcaacttcgccgccgggtcg
ctgcgccagaaagacccgaaaatcacggccctgcgccccctgaccttcttcgcctacgcc
tggggcgagacctccgcccccttcgccgagacgcaggcaggcgcgctggaggccttccgc
agctggggctttcaggtcaacgaccgctcggcccgcgtcgaaggcgccgacggcctgatc
ggcgtctaccagacgctggaggccaaccgcagccgcctcggctacgacatcgacggcgtg
gtctataaggtcgaccggctggactggcagaaccgcctcggcttcatcgcccgcagcccc
cgctgggccatcgcccacaaattcccggcgcaacaggccacgaccgttctggaaggcatc
gacatccaggtcggccgcaccggttccctgacccctgtcgcccgcctgcaccccgtcacc
gtcggcggcgtcgtggtccgcaacgccaccctgcacaacgaggacgagatcgcccgcaag
gacgtccgcatcggcgacaccgtcgtcctgcaacgcgccggcgacgtcatcccccagatc
gtcggcgtggtcgaaaccctgcgccccgagggcgccgtcccttacgtcttccccacggtc
tgccccgtctgcggctccgaagccgtgcgcgagggggacgaggttaagcgccgctgcacc
ggcggcctgatctgcgacgcccagatcgtcgagcgcctcaagcatttcgtcagccgccgc
gccttcgacatcgagggcctcggcgaaaagcagctgatcgccttccacgcccgcggctgg
atcaaggagcccgccgatatcttccgcctggcccgcgacgaagagaagctggccctgctg
cgggccgaggacggctatggcgagaccagcgtcggcaacctgatcgccgggatcgacgcg
cgccgcgtcatcagcctcgatcgcctgatcttcggcctgggcgtgcgcgagatcggcgaa
cagacctcgctggtgctgtcgcgcgccttcggcagctggaccgccttccgcgacgcctgc
atggccgccgccagcggcctcgccagcgacgactggaagaccctggccgcgacccacgcc
atctcgacccgcgtcttgggcctgatggccgaggcgcagcctcccgccgacgatccgtgg
ccggaagcgccgatggatcagaagatcgccctcgccttccccggcatggccgcgcccgcc
cgccgctcgctggcggaaatctccgaaggctggtccgacctgacccgctgggccgccgtc
gcgcgcgatgaaggcccgtccgacatgctgaaccagatcgcgggcgtctccggcgtcggc
ccggtcgccgccgaggccctggcccacttcttccacgagccgcacaaccttcaggtcgtc
gacgccctgctggccgaactcgagcgcgtcgaggacgtggccgcccccgtgaccgacagc
ccggtggcgggcaagaccgtcgtcttcaccggctcgctggaacgcttcacccgcgacgaa
gccaaggcccgcgccgaaagcctcggcgccaaggtctcgggctcggtgtcgaagaaaacc
gactacgtcgtcgccggtcccggcgccgggtccaagctgaaggacgccgaaaagcacggc
gtgaccgtcctgaccgaggacgagtggctggcgcttatttcctga
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