Bdellovibrio sp. ZAP7: DOM22_00260
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Entry
DOM22_00260 CDS
T06441
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bdz
Bdellovibrio sp. ZAP7
Pathway
bdz03030
DNA replication
bdz03410
Base excision repair
bdz03420
Nucleotide excision repair
bdz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DOM22_00260
03410 Base excision repair
DOM22_00260
03420 Nucleotide excision repair
DOM22_00260
03430 Mismatch repair
DOM22_00260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdz03032
]
DOM22_00260
03400 DNA repair and recombination proteins [BR:
bdz03400
]
DOM22_00260
Enzymes [BR:
bdz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DOM22_00260
DNA replication proteins [BR:
bdz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DOM22_00260
DNA repair and recombination proteins [BR:
bdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DOM22_00260
NER (nucleotide excision repair)
GGR (global genome repair) factors
DOM22_00260
MMR (mismatch excision repair)
DNA ligase
DOM22_00260
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DOM22_00260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Nlig-Ia
RNA_ligase
HHH_3
RUBY_RBDX
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QDK43710
LinkDB
All DBs
Position
complement(51089..53080)
Genome browser
AA seq
663 aa
AA seq
DB search
MSKKRHEELKKIIAEHDHNYYVMDRPAITDYEYDQLFDELLKIEKSEKGLDLSDSPSQRV
GGKVLESFTKATHRLPMLSLANSYSPEDIFEFDERIKKFLSSDKEVEYFCELKFDGLSME
IIYENGQLVRALTRGDGTIGEDVTENVKTIKSIPLKIKNAPEVFEVRGEVLIFKKDFAEL
NETQQESGQPTFANPRNAAAGSMRQLDSKVAAARPLKFFGYALGMVEGKTFETQEGIQEY
FADHGIPTAIKSNPDLVRLCKGPQEVVDYYHHIEKVRSSLPFDIDGIVIKVNSLRLQDDL
GLVARSPRWATAAKFKPEQATTVIENIHIQVGRTGALTPVAIMTPVKVGGVTVTNSTLHN
QDEIDRKDVRIGDTVIIQRAGDVIPEVVAVVLEKRPKNSKPFLMPEKCPACGSPVHKAEG
EVVTRCTNPLCIAMIKESLKHFVGRRAMNLDKIGDRLIETLVDNKMLTSFSDFYRLTKED
ILSLERQGDKSAENIITSIENSKKPTLARFIFGLGIRFVGEQTAKLLADHFVNIENFLNA
SEEELLQVPEIGPKVATSIREWTSNKKLVKEVHEMLKLGVEITNPVRATEGALSGMSFLI
TGTLPVKRDDAKDVIEKNGGKILSSVSSKLSYLVVGDDPGSKVDKAQTLGVKIISWEDLQ
KML
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagaaacgccacgaagagcttaaaaagatcattgctgaacacgaccacaactat
tacgtcatggatcgcccggcgatcaccgactatgagtatgatcagctatttgatgagctt
ttaaagatagaaaagtctgaaaagggattggacctgtcagattccccaagccagcgcgtg
ggtggaaaggttttagaaagcttcaccaaggcaacacatcgcctgccgatgttgtctctt
gccaatagttattcaccggaagacatctttgaattcgatgaacgcatcaaaaagtttctg
agttccgacaaagaggtggagtatttttgcgaacttaagtttgacggcctttcaatggaa
ataatctatgagaacggtcaactggttcgcgccctgacccgtggtgatggaactattggc
gaggacgtgaccgaaaatgtaaaaacgatcaaaagcattccgctaaaaattaagaatgct
cccgaagttttcgaagttcgtggcgaagttctaattttcaaaaaagatttcgctgaactg
aatgagactcagcaggaaagtggacaaccaacatttgccaaccctcgaaatgccgccgca
ggatctatgcgccaattagattctaaagttgctgcggctcgaccgcttaagttctttggc
tatgctctgggtatggttgagggtaaaacatttgaaacccaagaaggcattcaagaatat
tttgctgaccacggaattccgacggcgataaaatcaaacccggatctggttcgcttgtgt
aaaggaccgcaagaggtagttgattactatcaccatattgaaaaagttcgttcatcttta
ccatttgatattgatggtatcgtgatcaaagtgaattcattgcgccttcaagacgattta
ggcctggtcgcaagaagtccgcgctgggcaacggctgccaagtttaaacctgaacaagca
acaaccgtgattgaaaatattcacatccaggtcggtcgcacaggagccctgactccggtt
gcaatcatgactcccgttaaagtgggtggcgttaccgttacaaattccactcttcacaat
caagatgagattgatcgcaaagatgttcgcatcggtgatacggtcatcattcaacgcgct
ggcgatgtgattccggaagtagtggccgtggttctggaaaagcgcccaaaaaatagtaag
ccattcttaatgccagaaaagtgccccgcctgcggatctcccgttcacaaagctgaaggc
gaagtcgttacccgctgcacgaacccactttgtatcgcgatgatcaaagagtcgctaaaa
cacttcgtcggacgtcgtgcgatgaatttggataaaattggcgatcgcctgattgagaca
ttagttgataataaaatgctgacttcgttctccgatttttaccgcctgacgaaagaagac
atcctttctttggaacgccaaggagacaagtccgcagaaaatattattacaagcattgag
aacagcaaaaagccaacgcttgccagattcatttttggtttgggaattcgtttcgtcggc
gaacaaacggccaagctgcttgctgaccactttgttaatattgaaaacttcttaaacgcc
tccgaagaagagctgttgcaagtgccagaaatcgggcccaaggttgcaacttctattcgc
gaatggacgtctaacaaaaagctcgtcaaagaagttcacgaaatgcttaagcttggtgtg
gaaatcacaaaccccgtgcgcgccaccgaaggtgcactttcgggaatgagctttcttatc
actggaactttgccggtgaaacgtgatgatgccaaagatgtgattgaaaaaaatgggggt
aagattctaagctcagtttcttcaaagctcagctatcttgtcgtcggggatgacccgggc
tctaaggtcgataaagcacaaaccctgggcgtgaaaatcatttcctgggaagatcttcag
aagatgctttag
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