Betaproteobacteria bacterium UKL13-2: AEM42_12470
Help
Entry
AEM42_12470 CDS
T04342
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
beb
Betaproteobacteria bacterium UKL13-2
Pathway
beb03030
DNA replication
beb03410
Base excision repair
beb03420
Nucleotide excision repair
beb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
beb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AEM42_12470 (ligA)
03410 Base excision repair
AEM42_12470 (ligA)
03420 Nucleotide excision repair
AEM42_12470 (ligA)
03430 Mismatch repair
AEM42_12470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
beb03032
]
AEM42_12470 (ligA)
03400 DNA repair and recombination proteins [BR:
beb03400
]
AEM42_12470 (ligA)
Enzymes [BR:
beb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AEM42_12470 (ligA)
DNA replication proteins [BR:
beb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AEM42_12470 (ligA)
DNA repair and recombination proteins [BR:
beb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AEM42_12470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AEM42_12470 (ligA)
MMR (mismatch excision repair)
DNA ligase
AEM42_12470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AEM42_12470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
DUF1543
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
AMS33871
UniProt:
A0A142LNS5
LinkDB
All DBs
Position
complement(2786760..2788835)
Genome browser
AA seq
691 aa
AA seq
DB search
MSGSERSTEEKIARLRETLNEHLYRYHVLDAPTISDALYDGLYHELVALEAAHPSFVTPD
SPTQRVGAKPLEAFPEVSHRVPMLSLGNAFSDDDIVAFDKRCRTSLGNANHGDIEYACEP
KFDGLAISLTYERGIFVRGATRGDGAVGEDVTQNLRTVGSIPLRIATEAAVLEIRGEVLM
QRRDFERLNARQAANGEKVFVNPRNAAAGSLRQLDPTLTAERPLSFFAYGIGATDGVELP
STHAASMDMLARLRFPVTAERAVVLGVDGLRQYFARIGAARPTLPFDIDGVVYKVNNLAL
QQQLGFVSRAPRFAIAHKFPAEEATTILEGIDVQVGRTGAVTPVARLKPVFVGGTTVSNA
TLHNEDELRRKDLKIGDTVIVRRAGDVIPEVASAVLAYRPVDAREFVMPTRCPKCDSAII
RLEGEAVARCTGGLFCPAQRKQALLHFAQRRAMDIEGLGDKLVDQIVEHNIVHTAADLYR
LGLLALASLERMAEKSAQNLLDAIAQSKQTTLARFLFGLGIRHVGEATAKDLAKHFGNLD
RLMAATGDELLEVHDVGPVVAQSIRQFFDQPHNCEVVAQLRACGIRWPEHAGVMASAASG
AVGAVAAVELKGPFAGKTVVLTGTLATMSRDEAKEKLESVGAKVAGSVSKNTHFVIAGTE
AGSKLDKAQALGVPVLSEAEFIVRLDNSETH
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcagcgaacgatcaactgaagaaaagattgcgcgactacgcgagacgctcaac
gagcatttgtatcgttatcacgtactcgatgcgccgacgatttccgatgcgctctacgat
ggcctttatcacgagctcgtcgcgctagaagcggctcatccgtccttcgttacgccagat
tcgccaacccagcgtgtcggcgccaagccgctggaggcgtttccagaagtctcgcatcgc
gttcccatgctttccctcggaaacgcttttagcgatgacgacatcgtggcatttgataag
cgctgtcgaacctcgcttggcaatgccaatcacggcgacatcgaatatgcgtgtgaaccg
aagtttgatgggctagccatttcgctaacctacgaaagaggtatttttgtgcgcggtgca
acgcgaggcgacggcgcggtcggtgaggatgtcacgcagaacttgcgcacggtcggctca
atccctctcagaatcgcgactgaagctgcggttttggaaattcgtggcgaagtattgatg
cagcgccgcgactttgaacgattgaatgcacggcaggcggccaacggcgaaaaagtattt
gtcaacccgcgcaatgccgccgccggatcgctgcggcaactcgatccaacgctcaccgca
gagcgacccctgtcatttttcgcttatggtatcggtgcgaccgacggtgtggaactaccg
tcaacacacgccgcgtcgatggatatgctcgcccgactacgctttccggtcaccgccgag
cgtgccgtggttctcggggtggacggactgcgacagtattttgctcgcattggggcggca
cgcccaaccttgccgtttgatattgatggcgtggtgtacaaggtcaacaacttagcgcta
cagcagcagctcgggttcgtatcgcgtgcgccacgctttgcgattgcacataagttcccc
gccgaagaagcgacgaccatcttggaggggattgatgtccaagttgggcgtaccggtgca
gtcaccccagtggctcgactgaagcctgtattcgtgggcggcaccacggtatcaaatgcg
acccttcacaatgaggatgaattacgtcgcaaggacttgaaaatcggcgatacggtcatc
gtacgtcgtgctggtgatgttattcctgaagtcgcgtcggctgtcttggcgtatcgcccg
gtggacgcgcgtgaattcgtgatgccaacgcggtgccccaagtgtgactcggcgattatt
cgacttgaaggtgaagcagtagcgcgctgtaccggcggtctgttttgtcccgcgcagcgc
aaacaggcgctgctgcactttgcccagcgacgtgctatggatatcgaggggcttggcgat
aaattggtcgatcagattgtcgagcacaatatcgtccacacagcggcggacctctatcgt
ctcggtttgcttgcgctggccagcctggagcgcatggcagaaaaatcggcgcagaatttg
ttggatgccatcgcccaatcaaaacagactacactggcgcgctttttgttcggcctaggt
attcgccacgttggcgaagcgacggcgaaagacctcgccaaacacttcggcaatctggat
cgactgatggcggcaacgggtgatgagctgttggaggtgcatgatgttggcccagtggtg
gcgcaatctattcgacaattttttgatcagcctcacaactgcgaggtcgtcgcacagcta
cgcgcatgtggcatccggtggccggaacacgcgggcgtgatggcatcggctgcatcgggc
gcggtgggtgcggtggctgcggtggaattgaagggcccgtttgccggtaagacggtggtg
ctgacggggacgctcgcgacgatgtcgcgcgacgaggcaaaggaaaaactggaatcggtt
ggcgcaaaagtcgcaggcagcgtctcgaagaatacgcactttgtgattgcaggcactgag
gcagggagcaaactcgacaaggcgcaggcattaggtgttccggtgctaagcgaggcagaa
ttcatcgtccgactggacaactcagaaactcattag
DBGET
integrated database retrieval system
