Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 675: BTURN675_503
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Entry
BTURN675_503 CDS
T03907
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bed
Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 675
Pathway
bed03030
DNA replication
bed03410
Base excision repair
bed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BTURN675_503 (ligA)
03410 Base excision repair
BTURN675_503 (ligA)
03420 Nucleotide excision repair
BTURN675_503 (ligA)
03430 Mismatch repair
BTURN675_503 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bed03032
]
BTURN675_503 (ligA)
03400 DNA repair and recombination proteins [BR:
bed03400
]
BTURN675_503 (ligA)
Enzymes [BR:
bed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BTURN675_503 (ligA)
DNA replication proteins [BR:
bed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BTURN675_503 (ligA)
DNA repair and recombination proteins [BR:
bed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BTURN675_503 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BTURN675_503 (ligA)
MMR (mismatch excision repair)
DNA ligase
BTURN675_503 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BTURN675_503 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AKC60067
LinkDB
All DBs
Position
complement(589655..591454)
Genome browser
AA seq
599 aa
AA seq
DB search
MNDVKNFIKVLRDRLRNWEYLYYVENDSVVSDEEYDYHMEALRILEMKYPDLITIDSPTN
RIGGKLKSGFCQFHHTIPMLSLDSIFDESSLLNFDKRVRKRLQYKDDQEICYCCELKIDG
VGVHLVYKNGILISASTRGDGHIGEDVTDNVRTIRAIPLFLRKDKFFPELLEVRGEVFMS
NDAFLKLNKLFIQSGVKTFSNPRNAAAGSLRQLNSSVTHERSLDFFCYHLVSVVLSDDKM
SLSDSHYNRLQQCAIWGLPILRRYNQICTGIHAVLQYYKQVQQDRELLGFNIDGIVIKVD
SICSQNNLSVSLRAPRWAIGYKFSAKRFVARICDIRFQVSRMGVLIPVASIIPIVISGVV
IRSVNLHNIDFIRRLDLMIGDFVIIQRIGDVIPKIIHVVFSKRIFHECRPIMYPENCPVC
SSVLYQICCKKRVILRCNAGLNCFAQRKEILKHFVSRKAMNIVGMGDKIIDRLIKVGLLS
TQVDFFKLKIENLVSVDGVKFDLANRLLHAIEISKKTTLSRFIYALGIPNVGECTANILA
KHYGTLECLISAEIISLLAIRNIGDIVAYNVFNFFRNNHNICIVNELLSSDFGVRFMDG
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgttaaaaattttattaaagtattacgtgatcgtttacgtaattgggagtat
ttatattatgtggaaaacgattcagtagtatctgatgaagaatatgattatcatatggaa
gctcttcgtattttagaaatgaaataccctgatttaattactatagattctcctactaat
cgtataggaggaaaattaaaaagtggtttttgtcaatttcatcatactatacctatgcta
tcgttagatagcatttttgatgaatcttcattgttaaattttgataaacgtgttcgtaag
cgattgcaatataaagatgatcaagagatttgttattgttgcgaattaaagatagatggg
gtaggagttcatttagtatacaaaaacggtatattgatatctgcatcgactcgtggggat
ggtcatataggagaagatgtgactgataatgtacgtactattcgtgctattccgttattt
ttaagaaaagataaattttttcctgaattgttggaagtcaggggggaagtgtttatgtct
aatgatgcttttcttaaattaaataaattatttatacaaagtggagttaaaactttttca
aatcctagaaatgctgctgctggttctttgcgtcagttaaattcttctgttactcatgaa
cgttctttagattttttttgttatcatcttgttagtgtcgtattaagtgatgataaaatg
agtttatctgatagtcattataacaggttacaacagtgtgctatttggggtttacctata
ttgagaaggtataatcaaatctgcacgggtattcatgcagtgttgcaatattataaacaa
gtacaacaagatcgtgaattattaggatttaatatagatgggatagttattaaggtagat
tctatttgttcacaaaataatttgagtgtttcgttacgtgctcctcgatgggctatagga
tataagttttctgctaagcgatttgtagctagaatttgtgatatacggtttcaagttagt
cgaatgggagtactaatacccgtagcgtctattattccaattgtaatttcaggtgttgtg
attcgtagtgttaatttacataatattgattttattcgtcgtcttgacctaatgattggt
gattttgtgattatacagagaataggtgatgttattccgaaaattatacatgtggtgttt
tcaaagcgtatttttcatgaatgtcgtccaataatgtacccggagaattgtccggtttgt
agttctgtgttatatcaaatttgttgtaagaaacgtgtgattttacgttgtaatgccggc
ttaaattgttttgctcagcgaaaggagattttaaaacattttgtatctcgtaaagcgatg
aatattgttggaatgggggataaaattattgatcgattgattaaagttggtttgctgagt
acccaagtggatttttttaaattaaaaatagaaaatttggtgagtgtagatggtgttaaa
tttgatttagctaatcgtttattgcatgcgattgagatttcaaaaaaaactactttatcg
cgttttatatatgctttaggtattcctaatgttggagaatgcacagcaaatattttagca
aaacattatggcactcttgaatgtttaattagtgcggaaattatttctttattagctatt
agaaatattggggatatcgtggcatataatgtgtttaatttttttagaaataatcataat
atttgtatagtaaatgagttacttagttctgattttggtgttcgatttatggatgggtga
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