Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 757: BOBLI757_511
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Entry
BOBLI757_511 CDS
T03906
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ben
Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 757
Pathway
ben03030
DNA replication
ben03410
Base excision repair
ben03420
Nucleotide excision repair
ben03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BOBLI757_511 (ligA)
03410 Base excision repair
BOBLI757_511 (ligA)
03420 Nucleotide excision repair
BOBLI757_511 (ligA)
03430 Mismatch repair
BOBLI757_511 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ben03032
]
BOBLI757_511 (ligA)
03400 DNA repair and recombination proteins [BR:
ben03400
]
BOBLI757_511 (ligA)
Enzymes [BR:
ben01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BOBLI757_511 (ligA)
DNA replication proteins [BR:
ben03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BOBLI757_511 (ligA)
DNA repair and recombination proteins [BR:
ben03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BOBLI757_511 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BOBLI757_511 (ligA)
MMR (mismatch excision repair)
DNA ligase
BOBLI757_511 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BOBLI757_511 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AKC60654
UniProt:
A0A0E3Y8H0
LinkDB
All DBs
Position
complement(607446..609488)
Genome browser
AA seq
680 aa
AA seq
DB search
MNFNKEYIDWLRKLLLRWNYFYYINNNPEVSDVVYDNTMKELCDLENKYLGCVSVRSPTQ
LIGGTLNTTFKKLRHLSPMLSLDNIFEKSEFLSFDKRLRVMLVDEVRISYCCELKLDGLA
VNLVYKNGVFVSAATRGDGIYGEDITSNVRTISTIPSKFKITNNISFPDILEIRGEVFML
DIDFIALNEYLIKQGKKSFSNSRNAASGSLRQLNSAITAKRQLSFFCYGFGCVQGGNFPK
QHWDRLQYCKFLGMPVSDYTRLCQNSGEVLQYYNDVQKMRSVLGFRIDGVVIKVNDISLQ
KKLGYSFKAPRWAIACKFPSKQKISKLYSVDFQVGRTGILTPVARIEQVLLSGVKISNVS
LYNINEIQRLDLMIGDIVVICRIGDVIPRIIEVVKSYRKFNVVQPIKFPNYCPVCNTKIY
RVVQQAVLRCHAGLFCSAQRKRSIQHFAARKAMNIVGLGSSLIDQLIENRLVYTPADLFY
LNESQLLNLNNVGIKVVSNLLRSLNRAKCTTFSRFLYSLGIYKVGIVHAINLAIFYGTMD
RLVNADIASLMRVQNIGRVVAGYVYRFFREQYNLKIVKELLSSSIGIYWLEVAPLSLHTN
NIHSVFFGKNIVFTGSLSICSRRDVEDKLLLFGAQIHNNISSKTDLLIVGQSAGSKLQKA
IQMNIKIMEEMELLNLLKIN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaataaagaatatattgattggttgcgtaaattattacttcgttggaattat
ttttactacataaataataatccagaagtatctgatgtagtatatgataatactatgaaa
gagttgtgtgatttagaaaataaatatttgggttgtgtttctgtacgatcacctacccaa
ttaattgggggaacattaaataccacttttaaaaaactacgtcatttatcaccaatgtta
tcattggataatatttttgaaaaatctgaatttttgtcatttgataaacgattacgtgta
atgttagttgatgaagttaggatatcttattgttgtgaattaaagttagatggattagca
gtgaatcttgtgtataaaaatggagtatttgtatctgcggctactcgtggagatggtatt
tacggtgaagatattacttcgaatgtacgtacaatttctactataccgtctaagtttaaa
ataactaataatatttcatttcctgatattttggaaatcagaggtgaggtgttcatgtta
gatatagattttatcgcattaaatgaatatcttataaaacaaggtaaaaaaagcttttct
aattcaagaaatgctgcatctggatctttgcgtcaacttaattctgcaattactgccaaa
agacaattatcttttttttgctatggctttggttgtgtgcaaggaggtaattttcctaag
cagcattgggatcgtttacagtattgtaaatttttaggcatgcctgttagtgattatact
cgtctttgtcaaaatagtggtgaagtattgcaatattataatgatgtacaaaagatgcgt
tctgttttaggttttagaattgatggcgttgtaattaaagtaaatgatatatctttacaa
aaaaaattaggatattcgtttaaggcacctcgttgggctatcgcttgtaagtttcctagc
aaacaaaaaatatctaaattatatagtgtagattttcaagttggtcgcactggaatttta
actcctgttgctagaattgagcaagtattattatctggtgttaaaataagtaatgtaagt
ttatataatatcaacgagattcaacgtcttgatttgatgattggcgatatagtagttatt
tgcaggataggtgatgtaatcccacgaattatagaggttgttaaatcttatcgaaagttt
aatgtagtgcaaccaattaagtttcctaattattgtccggtatgtaatactaaaatttat
agggtagttcagcaagctgtattacgatgtcatgcaggtttattttgtagtgctcaacgc
aaaaggtctatacaacattttgctgctcgtaaagccatgaatattgttggtttaggaagt
agtttaatagatcaattaattgaaaatcgtttagtttatacgcctgctgatttgttttat
cttaatgaaagtcagttgcttaatttaaataatgtaggaataaaagttgtaagtaattta
ttacgttctttaaatagggcgaaatgtactactttttctcgttttttgtattctttgggt
atatataaagttggaatagttcatgctattaatttagcaattttttatggtactatggac
agattggttaatgctgatattgcatctttgatgcgtgtacagaatattggtcgagttgtt
gctggttatgtatatcgtttttttagagagcaatataatttaaaaatagttaaagaatta
cttagttcttctattggtatttattggttagaagttgctcctttatctttacatacaaat
aatatccatagtgtattttttggtaaaaatatagtttttacaggatctttaagtatttgt
tcgcgccgtgatgttgaggataaattgttattatttggagctcaaattcataataatatt
tctagtaaaactgatttattaattgttggtcaatctgcgggttctaagttacaaaaagct
atacaaatgaatattaaaatcatggaagagatggaattgttaaatttattaaaaattaat
taa
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