Bifidobacterium eulemuris: BE0216_03200
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Entry
BE0216_03200 CDS
T06951
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
beu
Bifidobacterium eulemuris
Pathway
beu03030
DNA replication
beu03410
Base excision repair
beu03420
Nucleotide excision repair
beu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
beu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BE0216_03200 (ligA)
03410 Base excision repair
BE0216_03200 (ligA)
03420 Nucleotide excision repair
BE0216_03200 (ligA)
03430 Mismatch repair
BE0216_03200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
beu03032
]
BE0216_03200 (ligA)
03400 DNA repair and recombination proteins [BR:
beu03400
]
BE0216_03200 (ligA)
Enzymes [BR:
beu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BE0216_03200 (ligA)
DNA replication proteins [BR:
beu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BE0216_03200 (ligA)
DNA repair and recombination proteins [BR:
beu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BE0216_03200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BE0216_03200 (ligA)
MMR (mismatch excision repair)
DNA ligase
BE0216_03200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BE0216_03200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
HHH_3
UPF0758_N
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QOL31578
UniProt:
A0A261GBT8
LinkDB
All DBs
Position
complement(714139..716769)
Genome browser
AA seq
876 aa
AA seq
DB search
MTDEQLAWDFDGMRDDAPVTPSSSSISRFEPGSAPWIAALQSDDDDAMLLDRLDVTSMDA
DDAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLERLEASFPALDNPQSPTHR
VGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYESVLRDLDWPEGRPLPMSCEVKIDGL
ALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTIGTIPANLGGPAEDVPQFVEIRGEVFMR
WDDFRALNAEQEEVGRNPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLGRLDWGEGRP
DDSHDAVADQSQAYALYSKWGVPVSPHNRSAGSFDEVLAMIDYYGEHRGDIEHALDGIVV
KVDDLALQRTLGATSRAPRWAVAYKYPPEEVNTELLDITVQVGRTGRVTPVAILKPVHVA
GSTVARTTLHNGYEVARKGVLIGDTVVVRKAGDVIPELVGPVLERRKGREASLREFVMPT
HCPSCGTLLAPAKEGDKDIRCPNMESCPAQLTERVISLSMRKAFDIEHLGEQSAIALTNP
EENRPESAATYAPDITEILVGPGEEPESYVPPVGLELPAPQTPVLRSEAGLFSLGVDDLR
DVRVWREAAIIEVRETTDAKGKRKKLRKRLGGSGLWHQVPAFWTSPAPAGKRKGGGYDVP
ADAVVVREETKTSRDGTVTRIPVIVKPMENTRKMLDEIDKARHADLWRVLVALSIRRLGP
PTARSIASALGSLDAIASASVEELSAIDGIGPEIAQSVVDWFAAAREPGDWRGETLRAWQ
AAGVGQAVAETSTLEQTLAGLTVVVTGSLEGFSRDSAKEAIISRGGKAAGSVSKKTDYVV
VGENAGSKAVKAEELGVPILDEDGFVALLANGPVAQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgagcagctggcttgggatttcgacggtatgcgggatgacgcccctgtgacg
cccagttcgtcgtcgatctcccgtttcgagccggggagcgcgccctggatcgccgccctg
cagtccgacgatgacgatgcgatgctcctcgaccgtttggacgtgacatccatggacgcc
gacgacgccgcccggctgtgggcgcgcgtggccgcatgggtggaatccgaccagatcgcc
tactatatcgacgacgctccggtcagttccgacgccgcctatgacgcgcgcatgcgctgc
ctggaacgcttggaggcgtcgttccctgcattggacaacccgcagtcgcccacgcaccgc
gtcggcggcaccttctccaatgatttcgcgtcggtgcgacacccctcgcgcatgatgagc
ctggatgacgtgttctccatcgaggagctgcgtgattggtacgaatccgtgctgcgcgac
ctcgattggcccgaaggcaggccgctgccgatgagctgcgaggtgaaaatcgacggcctg
gccctgaacctcgtctaccgtaacggcgtgctcgagcagggactgacgcgcggcgacggc
gtcaccggcgaggacatcaccctgaatgtgcgcaccatcggcaccattccggcgaatctc
ggcggtcccgccgaggatgtgccgcaattcgtggagatccgcggtgaggtgttcatgcga
tgggatgacttccgcgcgttgaacgccgaacaggaggaggtgggacgcaaccccttcgcc
aatccccgcaacgcggccgcaggatccttgcgccagaaggatccgcgcatcaccgccaca
cgccgtctgagtttctacgcgcacggactggggcggctcgactggggtgagggacgcccg
gacgattcgcatgatgcggtggctgaccagtcgcaggcctacgcgctgtactccaagtgg
ggcgtgcccgtttcgccgcacaaccggtccgcgggatccttcgacgaggtgctggcgatg
atcgactattacggcgagcatcgcggcgacatcgaacacgcgcttgacggcatcgtcgtc
aaagtggacgatctggccttgcagcgcacgctgggcgcgacctcgcgcgcgccgcgctgg
gccgtcgcctacaagtatccgcccgaagaggtgaacaccgaactgctcgacatcaccgtg
caggtcgggcgcaccgggcgggtgacgccggtcgcgatcttgaagcccgtgcatgtggcc
ggctccaccgtggcccgcaccaccctgcacaatggctatgaggtggcgcgcaaaggcgtg
ctcatcggcgacaccgtggtggtgcgcaaggcgggcgacgtgatccccgaactcgtcggg
ccggtgttggagcggcgtaaggggcgcgaggcgtcgttgcgcgagttcgtcatgcccacg
cattgcccctcctgcggcacgcttttggcaccggccaaggagggcgataaggacatccga
tgcccgaatatggaaagctgccccgcgcagctgaccgaacgggtgatttcgctgtcgatg
cgcaaggccttcgacatcgagcatctgggcgagcagagcgccatcgcgctgaccaatccg
gaggagaaccgtcccgaatcggccgccacctacgcgccggacatcaccgagattctggtc
gggccgggcgaggagccggagagctacgtgccgcccgtcgggttggagctgcctgcgccg
cagaccccggtgctgcgatcggaggcgggattgttctcgctgggcgtcgatgatctgcgc
gacgtgcgcgtatggcgtgaggccgcgatcatcgaagtgcgcgagacgacggatgcgaaa
ggcaaacgcaaaaagttacgcaaacgtctgggagggtcgggcctgtggcatcaggtgccc
gccttctggacttcgccggcgccggcgggcaagcgcaaggggggcggttatgacgtgccg
gcggacgcggtggtggtgcgtgaggagacgaaaacctcgcgcgacggcacggtgacgcgg
attccggtgatcgtcaagccgatggagaacacgcgcaaaatgctcgacgagatcgacaag
gcccggcatgccgatctgtggcgcgtgctggtggcgctgtccatccgccggctcggcccg
cccacggcccgcagcatcgcgtccgccttgggatcattggatgccatcgcctcggccagt
gtggaggagctgtccgccatcgacggcatcggaccggagatcgcgcagtccgtggtcgac
tggttcgcggccgcccgcgagccgggggattggcgtggcgagacgttgcgggcctggcag
gccgccggcgtcggtcaggctgtggccgagaccagcacgctggaacagacgctggccggc
ctgaccgtggtggtgaccggttccttggagggattctcgcgtgattccgccaaagaggcg
atcatctcgcgcggtggcaaggccgccggctcggtgagcaagaaaaccgactatgtggtc
gtcggcgagaacgcggggtccaaggccgtcaaagccgaggagctcggtgttccgattctc
gatgaggacgggtttgtggcgttgttggcgaatgggcctgtcgcgcagtag
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