Bartonella elizabethae: NCTC12898_01020
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Entry
NCTC12898_01020 CDS
T06159
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bez
Bartonella elizabethae
Pathway
bez03030
DNA replication
bez03410
Base excision repair
bez03420
Nucleotide excision repair
bez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12898_01020 (ligA)
03410 Base excision repair
NCTC12898_01020 (ligA)
03420 Nucleotide excision repair
NCTC12898_01020 (ligA)
03430 Mismatch repair
NCTC12898_01020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bez03032
]
NCTC12898_01020 (ligA)
03400 DNA repair and recombination proteins [BR:
bez03400
]
NCTC12898_01020 (ligA)
Enzymes [BR:
bez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC12898_01020 (ligA)
DNA replication proteins [BR:
bez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12898_01020 (ligA)
DNA repair and recombination proteins [BR:
bez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC12898_01020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12898_01020 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC12898_01020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12898_01020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
E1_dh
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
VEJ41585
LinkDB
All DBs
Position
1:complement(1159153..1161312)
Genome browser
AA seq
719 aa
AA seq
DB search
MNKDGIKSLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRQRNAEIEALFP
ELVRIDSPSHKIGAPVSEKFEKSVHTQPMLSLDNAFKSEDVTEFVERVRRFLRFAETQIL
EITAEPKIDGLSLSLRYEKGKLVCAATRGDGAVGENVTANARTISDIPKVLQGKFPDILE
VRGEVYMEREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLRFFAYGCGE
VSEIFAESQMEMIKNLKEYGFIINPLTKVFKTVEEIISYYRDVEECRHSLNYDIDGIVYK
INDLMLQKRLGFVSRSPRWAIAHKFPAEKAMALLEDIDIQVGRTGALTPVARLTPITVGG
VVVTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVVEKRKKDS
SAFVFPHLCPACGSHAVREAGEAVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGKKQV
EFFFHIQEETLRIHTPADIFTLQRRQENSLVRLENMEGFGAVSVRKLYDAINARRKIPLS
RFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCEQENKEGNEAWLELTNIEGI
GPQVGEAIVDFYQEAHNREVLAVLLEEVTPLDEEPVLTESSPLAGKIIVFTGTLAHMSRD
EAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAGELGVEVIDEEAWLQLIEGHYG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggacggaattaaaagcctcactgctcttgaagcagaaagtgaattagagtgg
ttagcaaaagagattgcacgtcatgatgtgctttataatcgtgatgatcaacctgaaatt
tctgatgctgaatatgatgctcttcgccagcgtaacgcagaaattgaagctctctttccc
gaactcgttcgtatagactctccttcacataaaattggagcaccggtttctgaaaagttt
gaaaaatctgttcatacacaaccgatgctttcccttgataatgcgtttaagtctgaagat
gttactgaatttgttgaacgtgtgcgtcgttttttacggtttgcagaaacacaaatatta
gaaataacggcggagccaaaaattgatggtttatcgttgtctttgcgctatgaaaagggg
aagcttgtatgtgctgcaacgcggggtgatggagctgttggtgaaaatgtgacagcgaat
gcacgaacaatttctgatattccaaaagttttgcaaggcaaatttcctgatattcttgag
gttcgcggtgaagtttatatggagcgggaggatttccaagcgcttaatatcagccaacaa
gagaagggtaagttaacctttgccaaccctcgaaatgctgcggctggatcattgcgtcaa
ctggattcacggataactgctagcagaaagctgcgattttttgcttatggttgtggtgag
gtgagcgaaatatttgcagaaagccaaatggagatgataaaaaatctcaaagaatatggc
tttattatcaatccattaacaaaagtttttaagacagtagaggaaattatttcctattat
cgtgatgtcgaagaatgccgtcattctttaaactatgatattgatggcattgtttataag
attaatgatttgatgctccaaaagcgtttgggatttgtttctcgttcgccgcgttgggct
attgcgcataaatttccagcagaaaaggctatggcgcttttggaagacattgatattcaa
gtggggcgcacgggagcattaacccctgttgcacgtcttacgccaattactgttggtggg
gtggtggtgaccaatgcaagtttgcataatgaggattatattaaaggaattggtcataaa
ggagagcccattcgtgagggacgtgatattcgtatcggcgatacggtgattatacaacgt
gctggcgatgtaattcctcaagtagttgatattgttgtagaaaaacgtaaaaaagactct
tctgcttttgtttttcctcatctctgccctgcttgtggcagtcatgcggttcgtgaagca
ggagaagctgtgcgtcgttgtactggggggcttatctgtcctgcacaagcaattgagcgt
attcgtcatttcgttgcacgcaatgcctttgatattgaagggcttggaaaaaaacaggtg
gagtttttctttcatattcaagaagaaacgcttcggattcatacacctgctgatattttt
actttacagcggcgccaagaaaactcgttggtacgtttggaaaatatggagggttttggt
gctgtttcagtgcgcaaactttatgatgccattaatgcacgtcgaaaaattcctctcagt
cgttttttgtttgcattgggaattcgccatgttggagaggtcaatgcacgccgtcttgca
cgtgcttatcaaacttatacagcttttgaaactgcggcaatggaagcgcttatgccatgt
gagcaggaaaataaagaaggcaatgaagcttggctggagcttaccaatattgaaggaatt
ggaccacaggtaggggaggcaattgttgatttttatcaagaagcccataaccgtgaggtt
ttggctgttttgcttgaagaagtaactcctctcgatgaggagcctgttttgacagaatct
tcaccgttagcgggaaagatcatagtttttacaggaactttagcgcatatgtctcgcgat
gaagcaaaagcattggcagagcgattaggggcaaagacttccggttcactttctaaaaaa
acagatcttcttgttgcagggcctggagcgggatcaaaattgactaaagctggggagtta
ggtgttgaggttatcgatgaagaggcttggctacagctgattgagggacattatggttaa
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