Brachybacterium faecium: Bfae_18930
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Entry
Bfae_18930 CDS
T00965
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfa
Brachybacterium faecium
Pathway
bfa03030
DNA replication
bfa03410
Base excision repair
bfa03420
Nucleotide excision repair
bfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bfae_18930
03410 Base excision repair
Bfae_18930
03420 Nucleotide excision repair
Bfae_18930
03430 Mismatch repair
Bfae_18930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfa03032
]
Bfae_18930
03400 DNA repair and recombination proteins [BR:
bfa03400
]
Bfae_18930
Enzymes [BR:
bfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bfae_18930
DNA replication proteins [BR:
bfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bfae_18930
DNA repair and recombination proteins [BR:
bfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bfae_18930
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bfae_18930
MMR (mismatch excision repair)
DNA ligase
Bfae_18930
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bfae_18930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
DUF8512
PGRL1_N
Motif
Other DBs
NCBI-ProteinID:
ACU85709
UniProt:
C7MDQ2
LinkDB
All DBs
Position
complement(2122840..2125455)
Genome browser
AA seq
871 aa
AA seq
DB search
MRHNDPVTTNEQGPRTADETAQQRIAALTARIEQARVDYYEHDAPTMADAEYDELEKELR
ALEEANPQLAAEDSPTRTVGGAAAAGLPTIDHAERMQSLDNVFSLEELREWCAHAAAELG
GEVRYLTELKIDGLAINLRYEHGELVTAATRGDGRTGEDVTVNALQIDGIPQRLSGSGHP
ALVEVRGEVFMPTADFERLNDLQVELRERAVAESRTRWESRQGSGRRPFDEQRESLAAAR
RFPTFANPRNTAAGGLRQQLDKKEGLEREAGEARLAALRLTVHGLGAWPDPPVGSQSEMY
ELLASWGLPTSRYMDVVDSIDEVAAYVEHHGEHRHDLEHEIDGIVVKVDSFAQQRALGST
SRAPRWAIAVKFPPEEVTTKLLDIQVQVGRTGRVTPFGVMEPVTVAGSTVEKATLHNQFD
VERKGVLIGDTIVLRKAGDVIPEILAPVESLRDGSERPFVMPAQCPACGTEIRPEREGDK
DWRCPNQRDCPAQVTGRVEHAGSRGAFDIESLGEESAIALTDPDKRRGEALAALAEGHAI
HLPLRDASDTAEEGFVVLKNGEVTAGTDGVPLLRITSADDPLLPAPQQGVITTGADLFDL
TPEGLEGVFVWQPERRNGEPTGDWRIQPAFWSRPQFRHYKRDEEWRQQKAPSVLKSTEVL
ISELEKAKSQPLWRVLVALSIRHVGPTAARSLATAYGSMDAIREASVEQLSDTDGVGEII
AEAVVEWFAVDWHRELVDGWARSGVRMADEVEEGFTKTLEGLTVVVTGGLEGFTRDGAKE
AIITRGGKASGSVSKKTDFVVVGENAGSKETKARELGLRILDEAGFVALLEGGAEAVALE
EDADDADPADAPSGADDDAGAADGVTEETTP
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
gtgcgccacaatgatccggtgaccacgaacgagcagggaccccgcaccgccgacgagacc
gcgcagcagcgcatcgccgcgctcaccgcccggatcgagcaggcgcgcgtcgactactac
gagcacgacgcccccacgatggcggacgccgagtacgacgagctggagaaggagctgcgc
gccctcgaggaggcgaacccgcagctggccgccgaggactcgcccacccgcaccgtgggc
ggcgcggccgccgcaggcctgcccacgatcgaccacgccgagcggatgcagagcctggac
aacgtcttctccctcgaggagctgcgcgaatggtgcgcccacgccgcggcggagctcggc
ggcgaggtgcgctacctcaccgagctgaagatcgacggcctggcgatcaacctccgctac
gagcacggcgagctggtcaccgcggccacccgcggcgacggccgcaccggcgaggacgtc
accgtcaacgcgctgcagatcgacggcatcccgcagcgcctcagcggcagcggccacccc
gcgctggtcgaggtgcgcggagaggtgttcatgcccaccgcggacttcgaacggctcaac
gacctccaggtcgagctgcgcgaacgggccgtcgccgaatcccgcacccgctgggaatcc
cgccagggcagcggacggcgccccttcgacgagcagcgggagtccctcgccgccgcccgc
cggttccccaccttcgccaacccccgcaacacggccgccggcggcctgcgccagcagctc
gacaagaaggagggcctcgagcgggaggccggggaggcacgcctggcggccctgcggctc
acggtgcacggactgggtgcctggcccgacccgcccgtcggctcccagagcgagatgtac
gagctgctggcctcctggggcctgcccacgagccggtacatggacgtcgtcgactcgatc
gacgaggtcgccgcctacgtcgagcaccacggcgagcaccgtcacgacctcgagcacgag
atcgacgggatcgtcgtcaaggtcgactccttcgcccagcagcgggcgctgggctccacc
tcccgcgccccgcgctgggcgatcgcggtgaagttccctcccgaggaggtcaccaccaag
ctcctggacatccaggtgcaggtgggccgcaccggccgcgtcaccccgttcggcgtgatg
gagccggtgaccgtcgcgggctccaccgtcgagaaggcgaccctgcacaaccagttcgac
gtcgagcgcaagggcgtgctcatcggcgacaccatcgtgctgcgcaaggcgggggacgtc
atccccgagatcctggcccccgtggagtcgctgcgcgacggcagcgagcggcccttcgtg
atgcccgcgcagtgccccgcatgcggcaccgagatccgccccgagcgggagggcgacaag
gactggcgctgccccaaccagcgcgactgccccgcgcaggtcaccgggagggtcgagcac
gccgggtcccgcggcgccttcgacatcgagtccctcggcgaggagagcgcgatcgccctc
accgatccggacaagcgccgcggggaggcgctcgccgcgctcgccgaggggcacgcgatc
cacctcccgctccgcgacgcctccgacaccgcggaggagggtttcgtggtcctcaagaac
ggcgaggtcaccgccggcaccgacggggtgccgctgctgcggatcacctccgccgacgat
ccgctgctgcccgcgccgcagcagggcgtgatcaccaccggtgccgatctcttcgacctc
acccccgaggggctcgagggcgtgttcgtgtggcagccggagcgccgcaacggcgagccg
acgggggactggcggatccagcccgcgttctggtcccgtccccagttccgccactacaag
cgggacgaggagtggaggcagcagaaggccccgtcggtgctgaaatccaccgaggtgctg
atctcagagctcgagaaggcgaagtcccagccgctgtggcgggtgctggtcgcgctctcg
atccgccacgtcggcccgaccgcagctcgctccctcgccaccgcctacggctcgatggac
gcgatccgggaggcgagcgtcgagcagctctcggacaccgacggggtcggcgagatcatc
gccgaggccgtcgtggagtggttcgccgtggactggcaccgcgagctcgtggacggctgg
gcccgctcgggcgtgcgcatggccgatgaggtcgaggagggcttcacgaagaccctcgaa
gggctgacggtcgtggtcaccggaggcctcgagggcttcacccgcgacggcgccaaggag
gcgatcatcacccgcggcggcaaggcctccggctccgtctcgaagaagaccgacttcgtt
gtcgtcggcgagaacgccggctctaaggagaccaaggcccgagagctggggctgcggatc
ctcgacgaggccggcttcgtggcgctgctcgagggcggcgccgaagcggtcgcgctcgag
gaggacgccgacgacgcggacccggccgacgccccctcaggcgcggacgacgacgcgggc
gcggcggacggcgtgacggaggagacgacgccgtag
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