Candidatus Borrelia fainii: BOFE_03140
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Entry
BOFE_03140 CDS
T09149
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfai
Candidatus Borrelia fainii
Pathway
bfai03030
DNA replication
bfai03410
Base excision repair
bfai03420
Nucleotide excision repair
bfai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BOFE_03140 (ligA)
03410 Base excision repair
BOFE_03140 (ligA)
03420 Nucleotide excision repair
BOFE_03140 (ligA)
03430 Mismatch repair
BOFE_03140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfai03032
]
BOFE_03140 (ligA)
03400 DNA repair and recombination proteins [BR:
bfai03400
]
BOFE_03140 (ligA)
Enzymes [BR:
bfai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BOFE_03140 (ligA)
DNA replication proteins [BR:
bfai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BOFE_03140 (ligA)
DNA repair and recombination proteins [BR:
bfai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BOFE_03140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BOFE_03140 (ligA)
MMR (mismatch excision repair)
DNA ligase
BOFE_03140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BOFE_03140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
BDU62774
LinkDB
All DBs
Position
complement(382334..384340)
Genome browser
AA seq
668 aa
AA seq
DB search
MIKDIEDEILRLKDNIKKWNKEYYVDSSPSVSDLIYDRALLRLQNLESKYPEYKTLDSPT
LKFGSDLLNNFEEVTHPLPILSLDKVYDIEKLSLWVEKMVLEGSSLGAYTGISVEPKIDG
CSIVLYYKDGILRRALTRGDGKVGNDVTENVRTIKNIPLSIDEKIELVLRGEIYITKENF
LKMNNTLKNPYLNARNLASGILRRINSREVANFPLDIFVYDVLNSSLGLTTNHDAFDKLK
KFGFKINPFCKFFDGKNLKKIINHVKEIEMQRNSLEYEIDGVVLKVDSFILRENLGCTSH
HPKWSIAYKFESCTGISKIVDIVVQVGRSGKITPVVHVEKVFVAGAFITNANLHNQDYID
SIGLNVGDIVAISRRGDVIPSVELVVEKLAIGSFKISSNCPSCKRALIKEGAHLFCVNKH
CSYRIIEQIKYFCSKKCMNIVGLSVKTIEFLFEMKFISSEIDLYTFNFDKLINLRGFDLK
RIDNLKRSISDSKSRPFRKLLLGMGIKELGENTILVLINNNLNSFDIISTLCKNKEAALA
KLLKIKGIGERIALNIIEAFNDKTILDKFNFFKELGFKLEECNTNCAVDDSFLFGKKFCI
TGSFEGCSRNVLIEKITKKGAIFNRAVTKRLDFLLVGEKPGIKLKKANNLGIKTFGLSDI
KDFVDLDN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatatagaagatgaaattttacgtttaaaagataatatcaaaaaatggaat
aaagagtattatgttgattcttcacccagtgtgagtgatttgatttatgatagagctctt
ttaagacttcaaaatttggaaagtaagtatcctgaatataaaactttggattctcccact
cttaagtttggaagcgatcttttaaataattttgaagaggttacacatcctttacctata
ttaagtttggataaggtttatgatattgagaaattatcgttgtgggttgagaaaatggtc
ttagaaggttctagtttgggagcttatactggcatctcagttgaacccaaaattgatggt
tgttcaattgttctctattataaagatgggatactgcggagagctttgactaggggagat
ggaaaggttggtaatgatgttactgagaatgttagaacaatcaaaaatattcctttgtct
attgatgaaaagattgaattggtattgaggggtgaaatttatattactaaggaaaatttt
ttgaaaatgaataacacattaaagaatccttatcttaatgctagaaatttagcctcaggt
atactaagaagaataaatagtagagaagttgctaattttcctttagatatttttgtttat
gatgttttaaattctagtttgggattgactactaaccatgatgcgtttgataaacttaag
aaatttggatttaaaattaatcctttttgtaaattttttgatggcaaaaacttaaaaaaa
attattaatcatgttaaagagatagagatgcaaagaaattctttggaatatgaaattgat
ggtgttgtgttgaaagttgatagttttattttaagagagaatttaggatgtacttctcat
catccgaagtggtcaatagcttataaatttgaatcttgcacaggcataagtaaaattgtt
gacatagtcgttcaggttggccgcagtggcaaaattactcctgttgtacatgtggagaag
gtatttgttgcgggggcttttattactaatgcaaatctgcataatcaagattatatagac
tctattggcttaaatgttggagatattgttgcgatttcaagacgtggagatgtaattcct
tctgttgaattggtggtagaaaagcttgcgattggtagttttaaaatttctagtaattgt
ccttcatgtaaaagggctttaattaaagagggtgcacatcttttttgtgtaaataaacat
tgttcttatcgaataattgaacagataaaatatttttgtagtaagaaatgcatgaatatt
gtaggactttcagtgaaaacaatagagttcctttttgaaatgaagtttatatcttcggag
attgatctttatacttttaattttgataaacttattaatttaaggggttttgatcttaag
agaatagataatttaaagcgttcaattagcgatagtaaaagtaggccatttagaaagttg
cttcttggtatgggaattaaagagcttggagaaaatacaatattggttttaattaataac
aatttaaactcgtttgatataattagtactctttgcaaaaataaagaggctgctcttgcc
aaacttttaaagattaagggaataggtgagaggatagctttaaatattattgaagcgttt
aatgataaaactattcttgataagtttaatttttttaaagaattagggtttaaattggaa
gaatgtaatactaattgtgctgtggatgattcttttttatttggcaaaaaattttgtatt
acaggttcttttgaagggtgttctagaaatgttcttattgaaaagattactaaaaaaggt
gctattttcaatagagcagttactaagcgtttagattttttacttgttggagagaaacct
ggaataaaattgaaaaaagccaataatttgggaattaaaacctttggtctttctgatatt
aaagattttgtggatttagataattaa
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