Bacteroides faecium: BacF7301_18205
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Entry
BacF7301_18205 CDS
T08751
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfc
Bacteroides faecium
Pathway
bfc03030
DNA replication
bfc03410
Base excision repair
bfc03420
Nucleotide excision repair
bfc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BacF7301_18205 (ligA)
03410 Base excision repair
BacF7301_18205 (ligA)
03420 Nucleotide excision repair
BacF7301_18205 (ligA)
03430 Mismatch repair
BacF7301_18205 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfc03032
]
BacF7301_18205 (ligA)
03400 DNA repair and recombination proteins [BR:
bfc03400
]
BacF7301_18205 (ligA)
Enzymes [BR:
bfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BacF7301_18205 (ligA)
DNA replication proteins [BR:
bfc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BacF7301_18205 (ligA)
DNA repair and recombination proteins [BR:
bfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BacF7301_18205 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BacF7301_18205 (ligA)
MMR (mismatch excision repair)
DNA ligase
BacF7301_18205 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BacF7301_18205 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
SpoOE-like
Motif
Other DBs
NCBI-ProteinID:
QIU95963
UniProt:
A0A6H0KS21
LinkDB
All DBs
Position
complement(4929065..4931065)
Genome browser
AA seq
666 aa
AA seq
DB search
MDIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYKDENSPTMR
VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYERVRKALNEDFEICCEMKYDGTSISL
TYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNFPATFEIRGEILMPWEVFEE
LNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGHYENLQE
AAKWGFKISDLTRKCQTLDEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNLGFTAK
SPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVKFITTCPECASKLVRYEGEAAH
YCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIENTADLYKLTTDDIKG
LERMGEKSAENIITGIAQSKTVPFERVIFALGIRFVGETVAKKIAKSFENIDELQQADLE
KLVSIDEIGEKIAQSILLYFANESNRDLVSRLKDAGLQLYRTEEDLSGYTDKLAGQSIVI
SGVFTHHSRDEYKELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDE
FLKLIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatataaaggaaaaaatagaggaattgcgtgccgaacttcaccggcataattataat
tattacgtgttgaacgctcccgaaatctcggataaggagtttgatgacaagatgcgtgag
ctccaggatttggaacaggcgcatccggagtataaagacgaaaactcgcctactatgcgt
gtaggtagcgatctaaacaagaacttcacgcaggtggcacacaaatatcctatgttgtca
ttggcaaatacgtattcggaagccgaggtgacagatttttatgaacgtgttcgcaaggcg
ctcaatgaggattttgagatttgttgcgaaatgaaatatgatggtacatcgatctcattg
acttatgaaaatgggaaattggttcgtgccgttacccgtggtgatggtgaaaaaggagat
gatgtgacggataatgtgaagacgatccgttccattccgcttgtgcttcatggtgataat
tttcctgccacttttgaaattcgtggggagattttgatgccgtgggaagtatttgaggaa
ttgaaccgcgaaaaggaagcacgtgaggagccgctttttgctaatccgagaaatgcagct
tccggtacattgaagttgcagaattcttctatcgttgcttctcgcaagctggacgcgtat
ttgtattatctgctgggagataatcttccttgtgacggacattatgaaaatcttcaggaa
gctgcgaaatggggctttaaaatatctgatttgacacgtaaatgccagacattggacgaa
gtttttgaatttatcaactattgggatgtcgaacgtaagaatctgccggttgccacagat
ggaattgttttaaaagtaaatagcttgcgacaacagaagaatttgggatttacggctaaa
tctccgcgttgggctattgcttataagtttcaggctgaacgtgctttgacacgcttaaat
aaggtgacttaccaggtaggcagaacaggtgctgtcactccagtggcgaacctggatcct
gtacagctttcgggaacggttgtgaaacgtgcgtctttgcataatgcggatattattgaa
ggacttgatttgcacattggagatatggtttatgtcgaaaaaggtggtgaaatcattcct
aaaatcacgggcgttgacaaggatgcgcgtagttttatgcttggtgagaaggtcaagttt
attactacttgtcccgagtgtgccagcaaattagtaagatatgaaggagaagctgcacac
tattgccctaatgaaacggcttgccccccacaaatcaaaggtaaaatagagcatttcatc
agtcgaaaggctatgaatatagatggattaggcccggaaacggtagatatgttctatcgg
ttgggtttaattgaaaatacggccgatttgtataagcttacaactgatgatatcaaggga
ttggagcgtatgggcgagaaatcagcagagaatattataacaggaattgctcaaagcaaa
acagttccttttgaacgggtaatctttgctttaggaatacgctttgtcggtgaaactgtg
gcgaagaagatagcaaagtcgtttgaaaatatagatgaactgcagcaggcagaccttgaa
aagttggttagtatcgatgaaatcggagaaaaaatagctcaaagtatcttgctgtatttt
gcgaatgagtctaatcgtgatctggttagccgcttgaaagatgccggattacagctttat
cgcactgaagaagatttaagtggatacacggataagctggcaggacagtctattgtcatc
agtggcgtgtttactcaccattcacgggatgaatataaagaacttatcgagaaaaacggt
ggcaaaaatgtaggaagtatttctgcgaaaacaagttttatccttgccggagataatatg
gggcctgcgaaactggaaaaagcgaaaaaacttggaataaccatacttagcgaagacgaa
tttctgaaacttatatcgtaa
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