Butyrivibrio fibrisolvens: CIY_16070
Help
Entry
CIY_16070 CDS
T02581
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfi
Butyrivibrio fibrisolvens
Pathway
bfi03030
DNA replication
bfi03410
Base excision repair
bfi03420
Nucleotide excision repair
bfi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CIY_16070
03410 Base excision repair
CIY_16070
03420 Nucleotide excision repair
CIY_16070
03430 Mismatch repair
CIY_16070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfi03032
]
CIY_16070
03400 DNA repair and recombination proteins [BR:
bfi03400
]
CIY_16070
Enzymes [BR:
bfi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CIY_16070
DNA replication proteins [BR:
bfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CIY_16070
DNA repair and recombination proteins [BR:
bfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CIY_16070
NER (nucleotide excision repair)
GGR (global genome repair) factors
CIY_16070
MMR (mismatch excision repair)
DNA ligase
CIY_16070
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CIY_16070
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
HHH
DUF8054_C
5_3_exonuc
DUF3920
Motif
Other DBs
NCBI-ProteinID:
CBK74374
LinkDB
All DBs
Position
1509614..1511569
Genome browser
AA seq
651 aa
AA seq
DB search
MNKYYNDDEPEITDFEYDQLMLQLKAAEKEHPEWVTPDSPTQKIGGVAKREAGVKVTHDV
PMLSIEDVFTKEEVVEWVKKVKAVHPDARFSVEAKIDGLSMTLRYEKDTTGKLKLKLAET
RGDGIVGEDVTENALVIPDVNRYLDLPYDNLQLRGEVYMSHEDFDRYNEDQELKGGKLAA
NPRNLAAGTLRQLDANITKQRGLKMFVFNVQQGPDELTVSHCKGLDILSEHKVPVVYHRI
CDNADEILNVIDEIGEKREEFEFDIDGAVVKIDQVAYRADFSTSAKYTNGHIAYKYPPEE
KETKLLDVELSVGRTGRVNPTAIFEPIRLCGTTVSRATLHNQDFIDELNIGIGDTIVVYK
SGEIIPKIKEVKQDKRPAGTTTYKIPNICPACGGPVSRDADTADMKCTNPSCPAQLERHI
INFVSRDAMDIRGFGEVYIIDLVRRGYIKDIADIYSLKDKRDELIEEGIIGKEKNTDKLL
GVIESSKENDAVKLFTGFGIPNVGKAAAKALLGQFKDIEKIMELSEEELMQVNDIGEISA
KSIYDYLHDPVNIDIIGRLKAAGVNMVEEEKEGATDKLSGLTFVITGTLPTMGRKEAQEL
IELNGGKCAGSVSKKTSYLVAGEAAGSKLDKANSLGVTVLDEEGLLSLINS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatattacaacgatgatgagcctgaaattacagatttcgagtatgatcagctt
atgctacagctaaaggctgctgaaaaggagcatccagagtgggtcacccctgattcgcca
acacagaaaatcggtggtgttgcaaagcgtgaggctggtgtaaaggttactcacgatgta
ccgatgctttctattgaggatgtatttacaaaagaggaagtagtggaatgggtgaagaag
gtgaaggctgttcatcctgatgccagattctcggtagaggcaaagatagatggtcttagt
atgacacttcgttacgagaaggacaccactggaaagctaaagctaaagctggctgagaca
cgaggcgatggaattgtgggagaggatgttacagaaaatgcccttgttattccagatgtt
aatcgctatcttgatttaccatatgacaatcttcagcttcgtggggaggtttatatgtcc
cacgaggattttgatagatataatgaagatcaggagctgaagggtggaaagcttgctgca
aatccacgtaatcttgctgcaggtacactgcgacagctggatgcaaatatcactaagcag
cgaggcttaaagatgtttgtttttaatgttcagcagggcccagatgagctgactgtcagc
cattgcaagggacttgatattttatctgaacacaaggttcctgtagtatatcatcgtatc
tgcgataatgctgatgagattttaaatgttattgatgaaatcggcgaaaagagagaagag
ttcgaatttgatatagatggtgctgttgttaagatagatcaggtggcatatagagctgat
ttttctactagcgctaaatatacaaatggtcatatcgcatacaaatatccaccagaggaa
aaggaaacaaagcttcttgatgtagagctttctgttggtagaacaggtagagttaaccct
actgcgattttcgagccaattcgtttatgcggtactacagttagtcgtgcaactcttcac
aatcaggatttcatagatgagctgaatattggtattggagataccattgtggtttataaa
tctggagaaataattccaaagattaaagaagtaaagcaggacaagcgtccagctggtact
acaacctacaagattccaaatatctgtcctgcctgtggtggccctgtttcaagggatgct
gatacagcggatatgaagtgtacaaatccaagctgtccagctcagctagagcgtcatatt
atcaattttgtttctagagacgcaatggatatcagaggctttggtgaagtctatatcata
gatcttgtaagaagagggtacattaaggacattgctgatatctattctcttaaggataag
cgagatgagcttattgaggaggggattatcggtaaggaaaagaatactgacaagcttctt
ggtgttatcgaaagctcaaaggaaaatgatgctgtaaagctttttacaggctttggtatt
cctaatgttggaaaggctgcagcaaaggcgttacttggacagttcaaggacatcgaaaaa
atcatggaactgtctgaagaagagcttatgcaggttaatgatattggagaaatcagtgcc
aaatctatttatgattatttgcacgaccctgtaaatattgacattattggcagattaaag
gctgcaggtgttaatatggtagaggaagaaaaagaaggcgctacagacaagctttcaggc
cttactttcgtaatcacaggaacacttcctactatgggccgaaaagaggcacaggagctc
atcgaattaaatggtggaaagtgcgcaggttctgtttctaagaaaactagttatttagtg
gctggagaggctgctggaagcaaattggataaagctaattcattaggtgttacagtactt
gatgaagagggcttactttcgttgataaatagttaa
DBGET
integrated database retrieval system
