Bifidobacterium adolescentis JCM 19861: B19861_11370
Help
Entry
B19861_11370 CDS
T09745
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfj
Bifidobacterium adolescentis JCM 19861
Pathway
bfj03030
DNA replication
bfj03410
Base excision repair
bfj03420
Nucleotide excision repair
bfj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B19861_11370 (ligA)
03410 Base excision repair
B19861_11370 (ligA)
03420 Nucleotide excision repair
B19861_11370 (ligA)
03430 Mismatch repair
B19861_11370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfj03032
]
B19861_11370 (ligA)
03400 DNA repair and recombination proteins [BR:
bfj03400
]
B19861_11370 (ligA)
Enzymes [BR:
bfj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B19861_11370 (ligA)
DNA replication proteins [BR:
bfj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B19861_11370 (ligA)
DNA repair and recombination proteins [BR:
bfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B19861_11370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B19861_11370 (ligA)
MMR (mismatch excision repair)
DNA ligase
B19861_11370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B19861_11370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
HHH_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
BEK83195
LinkDB
All DBs
Position
complement(1259311..1261983)
Genome browser
AA seq
890 aa
AA seq
DB search
MTNRDDSEQLAWDFDAPESDGSSAAVVADEGLASLTPGSERWIAALQPTDADAMRLDKVD
VASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSLDSP
QSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPLPMTCE
VKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEFVEIR
GEVFMRWDDFNKLNAENEDAGRAPFANPRNSAAGSLRQKDPRITATRRLSFYAHGIGSLR
WGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRGDIEHA
LDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPVAVL
KPVYVAGSTVSRTTLHNPFEVERKGVLIGDTVVVRKAGDVIPELVGPVLERRKGREGQIR
RFVMPTRCPSCGAELAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGDQSA
IALTNPEEDRPDSIDTYAPNITEIVVKPGEEPEPYEPVAGLELPPMQTPVLSSEAGLFSL
TSADLKDVRVWREAPIIEIHETVGSNGKIKKVRKRVGGSGLWHQVPAFWTAPTAARKRKE
ADIDETAEYPQYVVPDDAVVIREEIKVSRGGASSVQPVYIRPAENTRKMLDEMDKARHAD
LWRVLVALSIRRLGPPTARTIASAFGTLDAIEHASVDELSQIDGIGPEIAESVVTWFTAA
REPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTVVVTGSLEGFSRDSAKEAIVLRG
GKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPILNEDQFKQLLDTGTVE
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatcgtgatgattccgaacagttggcatgggatttcgacgcgccggagagcgac
ggtagttccgcggccgtcgtggccgatgaggggctggcttcgctgactccgggcagcgaa
cgttggattgccgcgttgcagccgaccgatgccgacgccatgcgcctcgacaaggttgat
gtggcttcgatgagcgccgaagccgcggccaggctgtgggcgcgcgtggccgcatgggtg
gaatcagaccagatcgcatactatatcgacgatgcccccgtctcatccgacgcggcatat
gacgcaagattgcgctgcctgcaatcgcttgaggcgcagttcccatcacttgactcaccg
cagtcaccgacccatcgcgtgggcggcacgttctccaacgacttcgcttccgtacgtcat
ccatcgcgcatgatgagcctcgatgacgtgttctccatcgaggagctgcgcgaatggtac
gacggcgtgctcaggggattggattggcccgaatcgaagccactgcccatgacctgcgag
gtgaaaatcgacggtcttgcgctgaacctcatctaccgcaacggcgtgcttgaacagggt
ctgaccagaggcgatggcgtgaccggcgaggacatcactctcaacgtgcgcaccatctcc
accattccgcagaaccttgccggaccggaggaagacattcccgaattcgtggagatccgc
ggcgaagtgttcatgcgatgggacgatttcaacaagctgaacgccgagaacgaggacgcc
ggtcgcgcgccattcgccaatccccgcaactcggccgcaggtagcctgagacagaaggat
ccgcgtatcaccgcaacccgtcgcctgagcttctacgcgcacggcatcggatcgctgcgt
tggggtgcggggcacgccggcaacggccatgatgtggtcaacgaccaatccgaagcctac
gaattgtataagaaatggggtgtgcccgtctctccgcacaaccgtgaggtcacgtcgttc
aaggaaatcctcgacatgatcgactattacggcgaacaccgaggcgacatcgaacacgcg
cttgacggcatcgtcgtgaaggtcgacgatttgggattgcagcgttcccttggcgccaca
tcgcgggcgccgcgctgggccatcgcctacaaatatccaccggaagaagtcaataccgag
ctgcttgacatcactgtgcaggtggggcgcaccggacgtgtgactccggtggcggtgttg
aaacccgtgtacgtggccggttccacagtatcccgtaccacgctgcacaacccctttgaa
gtggaacgcaaaggcgtgctcatcggcgacaccgtggtggtgcgcaaggcgggagacgtg
attcccgagctcgtcggtccggtgctggagcgacgcaagggacgcgagggccagatccgc
cggttcgtgatgcccacgcgttgcccgagctgcggcgcggaactcgctcccgccaaagag
ggagacaaagatatacgctgcccgaacgtggaatcctgcccggcgcagctgaccgagcgg
atcatcaatctggcgtcccgcaaggcgttcgatatcgaacatctgggcgaccaatcagcc
attgcgctgacgaatcccgaagaggacaggcccgattccatcgacacgtatgcgccgaac
atcaccgaaatcgtggtgaaacccggtgaggagcctgaaccgtacgagccggtggcggga
ctggaactgccgcccatgcagacacctgtgctgtccagcgaggccgggctgttctcgttg
acgtccgcagacctcaaggatgtgcgcgtctggcgcgaggccccaatcatcgaaatccac
gagaccgtcgggtcaaacggcaagatcaagaaagtgcgcaaacgtgtgggcggatccgga
ttatggcatcaggtgcccgcattctggaccgcgcctaccgccgcccgcaaacgcaaggaa
gccgacatcgacgagaccgcggaatatccgcaatacgtggtgccggatgacgccgtggtg
atccgcgaggaaatcaaggtatcccgtggaggcgcgtccagcgtgcagccggtgtacatt
cgtccggcggaaaacacccgcaagatgctcgacgaaatggacaaagcccgccatgccgac
ctgtggcgcgttctggtggccctgtccatccgcaggctcggaccgcccaccgcacgcacc
atcgccagcgcgttcggtacgttggatgccatcgaacatgccagcgtggacgaattgtcc
caaatcgacggtattggtccggaaattgcggaatccgtagtcacatggttcaccgcggcc
cgtgagccgggcaattggcgcggtgccgtgcttgacgcatggaaggccgccggcgtagga
gtcggacaagcccaagccagcggactaccacagacattggcaggcaaaacggtcgtggtc
accggctcgttggaaggattctcccgcgattccgccaaagaggccatcgttctgcgcgga
ggcaaagccgcaggatccgtcagcaagaaaaccgattgggtcgtcgtaggcgagaatgcc
ggctcaaaagccgcaaaagccgaggaactgggcatccccatactcaacgaagaccaattc
aaacagctgctcgacacaggaacagttgaataa
DBGET
integrated database retrieval system