KEGG   Bifidobacterium adolescentis JCM 19861: B19861_11370
Entry
B19861_11370      CDS       T09745                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bfj  Bifidobacterium adolescentis JCM 19861
Pathway
bfj03030  DNA replication
bfj03410  Base excision repair
bfj03420  Nucleotide excision repair
bfj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bfj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B19861_11370 (ligA)
   03410 Base excision repair
    B19861_11370 (ligA)
   03420 Nucleotide excision repair
    B19861_11370 (ligA)
   03430 Mismatch repair
    B19861_11370 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bfj03032]
    B19861_11370 (ligA)
   03400 DNA repair and recombination proteins [BR:bfj03400]
    B19861_11370 (ligA)
Enzymes [BR:bfj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B19861_11370 (ligA)
DNA replication proteins [BR:bfj03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B19861_11370 (ligA)
DNA repair and recombination proteins [BR:bfj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B19861_11370 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B19861_11370 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     B19861_11370 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B19861_11370 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH Nlig-Ia HHH_3 UPF0758_N
Other DBs
NCBI-ProteinID: BEK83195
LinkDB
Position
complement(1259311..1261983)
AA seq 890 aa
MTNRDDSEQLAWDFDAPESDGSSAAVVADEGLASLTPGSERWIAALQPTDADAMRLDKVD
VASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSLDSP
QSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPLPMTCE
VKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEFVEIR
GEVFMRWDDFNKLNAENEDAGRAPFANPRNSAAGSLRQKDPRITATRRLSFYAHGIGSLR
WGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRGDIEHA
LDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPVAVL
KPVYVAGSTVSRTTLHNPFEVERKGVLIGDTVVVRKAGDVIPELVGPVLERRKGREGQIR
RFVMPTRCPSCGAELAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGDQSA
IALTNPEEDRPDSIDTYAPNITEIVVKPGEEPEPYEPVAGLELPPMQTPVLSSEAGLFSL
TSADLKDVRVWREAPIIEIHETVGSNGKIKKVRKRVGGSGLWHQVPAFWTAPTAARKRKE
ADIDETAEYPQYVVPDDAVVIREEIKVSRGGASSVQPVYIRPAENTRKMLDEMDKARHAD
LWRVLVALSIRRLGPPTARTIASAFGTLDAIEHASVDELSQIDGIGPEIAESVVTWFTAA
REPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTVVVTGSLEGFSRDSAKEAIVLRG
GKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPILNEDQFKQLLDTGTVE
NT seq 2673 nt   +upstreamnt  +downstreamnt
atgacgaatcgtgatgattccgaacagttggcatgggatttcgacgcgccggagagcgac
ggtagttccgcggccgtcgtggccgatgaggggctggcttcgctgactccgggcagcgaa
cgttggattgccgcgttgcagccgaccgatgccgacgccatgcgcctcgacaaggttgat
gtggcttcgatgagcgccgaagccgcggccaggctgtgggcgcgcgtggccgcatgggtg
gaatcagaccagatcgcatactatatcgacgatgcccccgtctcatccgacgcggcatat
gacgcaagattgcgctgcctgcaatcgcttgaggcgcagttcccatcacttgactcaccg
cagtcaccgacccatcgcgtgggcggcacgttctccaacgacttcgcttccgtacgtcat
ccatcgcgcatgatgagcctcgatgacgtgttctccatcgaggagctgcgcgaatggtac
gacggcgtgctcaggggattggattggcccgaatcgaagccactgcccatgacctgcgag
gtgaaaatcgacggtcttgcgctgaacctcatctaccgcaacggcgtgcttgaacagggt
ctgaccagaggcgatggcgtgaccggcgaggacatcactctcaacgtgcgcaccatctcc
accattccgcagaaccttgccggaccggaggaagacattcccgaattcgtggagatccgc
ggcgaagtgttcatgcgatgggacgatttcaacaagctgaacgccgagaacgaggacgcc
ggtcgcgcgccattcgccaatccccgcaactcggccgcaggtagcctgagacagaaggat
ccgcgtatcaccgcaacccgtcgcctgagcttctacgcgcacggcatcggatcgctgcgt
tggggtgcggggcacgccggcaacggccatgatgtggtcaacgaccaatccgaagcctac
gaattgtataagaaatggggtgtgcccgtctctccgcacaaccgtgaggtcacgtcgttc
aaggaaatcctcgacatgatcgactattacggcgaacaccgaggcgacatcgaacacgcg
cttgacggcatcgtcgtgaaggtcgacgatttgggattgcagcgttcccttggcgccaca
tcgcgggcgccgcgctgggccatcgcctacaaatatccaccggaagaagtcaataccgag
ctgcttgacatcactgtgcaggtggggcgcaccggacgtgtgactccggtggcggtgttg
aaacccgtgtacgtggccggttccacagtatcccgtaccacgctgcacaacccctttgaa
gtggaacgcaaaggcgtgctcatcggcgacaccgtggtggtgcgcaaggcgggagacgtg
attcccgagctcgtcggtccggtgctggagcgacgcaagggacgcgagggccagatccgc
cggttcgtgatgcccacgcgttgcccgagctgcggcgcggaactcgctcccgccaaagag
ggagacaaagatatacgctgcccgaacgtggaatcctgcccggcgcagctgaccgagcgg
atcatcaatctggcgtcccgcaaggcgttcgatatcgaacatctgggcgaccaatcagcc
attgcgctgacgaatcccgaagaggacaggcccgattccatcgacacgtatgcgccgaac
atcaccgaaatcgtggtgaaacccggtgaggagcctgaaccgtacgagccggtggcggga
ctggaactgccgcccatgcagacacctgtgctgtccagcgaggccgggctgttctcgttg
acgtccgcagacctcaaggatgtgcgcgtctggcgcgaggccccaatcatcgaaatccac
gagaccgtcgggtcaaacggcaagatcaagaaagtgcgcaaacgtgtgggcggatccgga
ttatggcatcaggtgcccgcattctggaccgcgcctaccgccgcccgcaaacgcaaggaa
gccgacatcgacgagaccgcggaatatccgcaatacgtggtgccggatgacgccgtggtg
atccgcgaggaaatcaaggtatcccgtggaggcgcgtccagcgtgcagccggtgtacatt
cgtccggcggaaaacacccgcaagatgctcgacgaaatggacaaagcccgccatgccgac
ctgtggcgcgttctggtggccctgtccatccgcaggctcggaccgcccaccgcacgcacc
atcgccagcgcgttcggtacgttggatgccatcgaacatgccagcgtggacgaattgtcc
caaatcgacggtattggtccggaaattgcggaatccgtagtcacatggttcaccgcggcc
cgtgagccgggcaattggcgcggtgccgtgcttgacgcatggaaggccgccggcgtagga
gtcggacaagcccaagccagcggactaccacagacattggcaggcaaaacggtcgtggtc
accggctcgttggaaggattctcccgcgattccgccaaagaggccatcgttctgcgcgga
ggcaaagccgcaggatccgtcagcaagaaaaccgattgggtcgtcgtaggcgagaatgcc
ggctcaaaagccgcaaaagccgaggaactgggcatccccatactcaacgaagaccaattc
aaacagctgctcgacacaggaacagttgaataa

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