Bifidobacterium fermentum: QN062_02820
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Entry
QN062_02820 CDS
T10739
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfk Bifidobacterium fermentum
Pathway
bfk03030
DNA replication
bfk03410
Base excision repair
bfk03420
Nucleotide excision repair
bfk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QN062_02820 (ligA)
03410 Base excision repair
QN062_02820 (ligA)
03420 Nucleotide excision repair
QN062_02820 (ligA)
03430 Mismatch repair
QN062_02820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfk03032
]
QN062_02820 (ligA)
03400 DNA repair and recombination proteins [BR:
bfk03400
]
QN062_02820 (ligA)
Enzymes [BR:
bfk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QN062_02820 (ligA)
DNA replication proteins [BR:
bfk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QN062_02820 (ligA)
DNA repair and recombination proteins [BR:
bfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QN062_02820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QN062_02820 (ligA)
MMR (mismatch excision repair)
DNA ligase
QN062_02820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QN062_02820 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
XDS51131
LinkDB
All DBs
Position
complement(700750..703389)
Genome browser
AA seq
879 aa
AA seq
DB search
MVMKGVALNGIRAEKVRNSQNSQTVEQSGQNSFDLDSIADSTVGMVSGSDAWIANLQDAD
ADAMRLADLQVTQLTTEQATRLWTKLSAWVESDQIAYYIKDAPVSSDAAYDERMRCMQEL
ERQFPTLDTPESPTHRVGGTFSNDFASVRHPSRMLSLDDVFSIEELRQWFDGAYKDLDEP
ESRKLPMTCEVKIDGLALNLIYENGVLKQGLTRGDGVTGEDITLNVHTIGTIPDRLAGPA
KDIPEMVEIRGEVFMRFDDFKALNDDNARLGKAPFANPRNAAAGSLRQKDPRITASRRLS
FYAHGIGTLRWGAKASRAGHDQVDDQSEAYELYKTWGIPVSPHNREITSFDQITDMIDYY
GEHRNDIEHALDGIVVKIDDLGLQRRLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGR
TGRVTPVAILKPVYVAGSTVSRTTLHNASEVERKGVEIGDTVVVRKAGDVIPELVGPVLE
RRKGRESQLRRFVMPERCPSCGARLAPAKEGDVDIRCPNVESCPAQLTERVIHMASRKAF
DIEHLGEQSAIALTNPEDNRPESAEVFAPNVSEVLVKAGEEPEPYEPMKGLALPPVQRPV
LSSEAGLFDIEASDLADVRVWREAPIIEIRESEKDGKRRRQRHRVGGSGLWHQIYAFYNQ
PKSAGKTKEPTAQPQALNASEDEDRSIRKAAPSRTTQDMIAEIDQARKADLWRVLVALSI
RHLGPTSARGIASRFGSLTKVEEASVDELAELDGVGEEIAQSIVEWFAQAHEPGDWRGKI
LESWKRNGVGEGVADVHRPQTLDGMTVVVTGGLDDFSRDSAKEAIIEHGGKASGSVSKKT
TYVVVGENPGSKADKAEQLGVPVLDEAAFHRLLDTGKPE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgaaaggggtagccttgaacggcattcgtgcggaaaaggtcaggaattcgcag
aattcgcagacggtcgaacagtcggggcagaattcgttcgatctggattccatcgcggac
tccaccgttggcatggtgtcaggcagcgatgcctggatcgcgaacctgcaggatgccgat
gccgatgcgatgaggcttgccgaccttcaagtgacgcagctgacgaccgagcaggcgaca
aggctgtggacgaagctttcggcatgggtagagtccgatcagatcgcatactatatcaag
gatgctccggtctcttccgacgcggcctatgacgaacggatgcgctgcatgcaggagttg
gagcgacagttcccgacgctcgacacccctgaatcgccgacgcacagggttggcggaacc
ttctcaaacgattttgcatccgtgaggcatccctcaaggatgctgagcctggacgacgtg
ttcagcatcgaggaactgcggcaatggttcgatggcgcatacaaggatctggatgagccc
gagtccagaaagcttccgatgacctgcgaggtcaagatcgacgggctcgcgctcaacctg
atatatgagaacggtgtgctgaagcagggactgacacgaggcgatggcgtcaccggcgaa
gacatcacgctgaacgtccatacgatcggcaccattcccgacaggctggctggacctgcg
aaggacattcccgagatggtcgagatacgtggcgaggtattcatgcgcttcgacgatttc
aaggcgctcaatgatgacaatgcgcgtctcggcaaggcgccattcgccaacccgcgcaat
gccgcggccggctcgctgcgtcagaaggatccacgcatcaccgcgtccagaagactcagc
ttctatgcccacggcatcggaacgctgcgttggggcgccaaggcgtcgcgtgcagggcac
gaccaggtcgatgatcagtcagaggcatacgaactctacaagacctggggcattccggtg
tctccacataatcgagaaatcacgtctttcgatcagatcactgacatgattgactattac
ggcgagcatcgcaacgatatcgaacatgccttggacggcatcgtcgtcaagatcgatgac
cttgggctgcaaaggcgcctgggtgccacgtcgcgtgctccgcgatgggcgattgcgtac
aaataccctccagaagaggtcaataccgagctgttgaacattactgtgcaggtgggtaga
acaggccgtgtgacacccgtggcgattcttaaaccggtgtatgtggccggttcgacggtt
tccagaacgaccttgcacaatgcctccgaagtggagcgcaagggcgttgaaatcggagat
accgtcgtggttcgcaaggcgggcgacgtgattcctgagctggtcggtccggtgctggaa
cgccgcaagggtcgcgaatcacagttgcgcagattcgtgatgccggagcgatgcccgagc
tgtggcgccagactggctcccgccaaggagggtgacgttgacatccgctgtcccaatgtc
gaatcatgcccggcccagctgaccgagcgcgtgattcatatggcttcacgcaaggccttc
gacatcgagcatctgggggagcagagcgccattgccctgaccaatccagaggacaatcgg
cctgaatccgctgaagtgtttgcgcccaatgtttcagaggttctcgtcaaggcaggtgag
gagcccgaaccgtatgagccgatgaaggggcttgcgctgcccccggttcagcgtcccgtg
ctctcgagcgaggcaggtctctttgacatcgaggccagcgacctcgccgatgtgagagtg
tggcgcgaggctcccatcatcgagattcgcgagagcgagaaggatgggaagcgtcgcagg
caaaggcatagggtcggcggcagcggtctgtggcatcagatatatgccttctacaatcag
cccaagagcgcagggaagaccaaggaaccgacggctcagccgcaggcgttgaacgcttcg
gaggatgaggacaggtcgatacgcaaggctgcaccttcacgaacgacgcaggacatgatc
gcagagatcgatcaggcacggaaggctgacctgtggcgagttctggtggcactgtcgatt
cgccatctgggaccgacatcagctcgtggcatcgcatctcgctttggttcgctgacaaag
gtcgaggaggcaagcgtcgatgaacttgccgaactcgacggagtcggagaggaaatcgcc
caatccatagtcgaatggttcgcccaggcgcacgaacctggtgattggcgtggcaagatt
ctcgaaagctggaagcgcaacggcgttggcgaaggagtcgcagatgttcatcgtccacag
accttggacggcatgaccgtcgtggtgacgggtggacttgacgatttttcgcgagattcc
gccaaggaagccatcatcgaacatggtggcaaggcgtccggttccgtgagcaaaaaaacc
acatatgtcgtcgtcggcgagaatcctgggtcaaaggcagacaaggccgagcagctcggc
gtgccggtcctcgatgaggcggcgttccatcgtcttctcgacactggaaaacccgaatag
DBGET
integrated database retrieval system
