Branchiostoma floridae (Florida lancelet): 118404999
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Entry
118404999 CDS
T01074
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bfo03036
]
118404999
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118404999
Chromosome and associated proteins [BR:
bfo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
118404999
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
118404999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
118404999
NCBI-ProteinID:
XP_035660292
UniProt:
A0A9J7KIK8
LinkDB
All DBs
Position
17:6337117..6393152
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AA seq
1993 aa
AA seq
DB search
MASGGRPGTRSSGQDAMDAEEETSVFVYDRREGDYPEKKIQLGGIFKFESFKARIREVFK
LKNEEEFVIVTTNREEIKDTKTYDKLIEDGDTLYILNTADQELAAPTQERIDYLPHYDTL
VKSGMYEYYASEGQNPLPYAFAELIDNALAATADNVGDRNIELRIILDDRIEGGKHCICV
LDNGHGMTSKDLNDWAVYRLSKFNRKDRRRSTGGAAQSAPQVTVDTRTRAEPTAGESELG
FWRPRSLNSEISYFGVGGKQAVFFIGTTTRMITKPKNSKDVHELVISQEDFEKKEKNKEK
IYSGYIRNRKPGDTSHISPEEDHIRKIISEETGRENFTAVVVTNVNTVHLKFLKDYMKYW
PKQLSHIYHYYLHGPQGNTAAAEGGKRARCDSPSQHIHIQIKLIQMGRKEKIVDLRELED
DMQTQYIQKSADSFEFKATVEGTGIVEGILRYHPFLYDRETYPPDMYAPPVVEEDEDDCV
STDRPARGKRPIFECYWNGRLIPYTFVDDFEWCSPPKKRGVIPVECYNRISGCLFTNDKF
QVSTNKLTFMDLEVRLKDKNTTYSMVKQGQEQRAKIDRQFFEWLKECHEKYDKQVKFCGF
GGSITRPELASKKQQAPWAVFKSIEWDGKVFKEGQLVRTQRTVPIIYGTIQRFLLHGDYE
GEVFATGGEMEIRQEPSSLYDEVKVLHLSKLDRSTTKLQAKKYIEEEEAKLPDKVVVKWP
EGDSLQNNDKIPAGRTIGAMKVEIFNRKGEAINRLPGGSGPGSAGSRKLLVELKIIWHSP
SGDSIIVSHISQHGGRWPYWFRKMENVKNLGKHTLRLQVVMNESDNTIFAGKELPSLNIK
FTVTEAAPDKFTVGLMDPPFQVGQPFQIPLELQDEFGHPTSATNKLQPVLEASGLDLSYE
GTEAKGSTLVIKKVTALGDVGSHQGKNFNLKVTLPGLEEDTQVLKIRLLPGPPSSLHVKP
TDDSLQVENGKELSFDVEVRDKAGNISTQPKLDVTCKFTGSSGLPTYSVDCSNTGRGVLT
GEPIQVRNMKKEQWLRAVILCPSFRGIPAIEKKVVVTPSTRASTLELSYMDQEKETVQVR
HQASVTCTAGETLDGLTFTVLDEASRILPITEATAAKIKVNWTPRLNTKEVLKGNLPAIK
VPLSVTETKYCQVTLHDHYPIELGFTIRPQAGEGIHLRCTCTGEQVLRYGEMLQGDIHIT
VVDTHGNPTKLTQGGLKYLNVEADGLDTSACSRSLGEKSDHFVLKNIRFHSEGPLGTKEL
CVTWRDLQEFVRLVIVPGPPVGMEIIDWPEDGPLMVYNGTEFDKPLVVQLIDAAGNPSQE
SGVGVQLDKDKGLELTPSPQCVKTDASGRANFGIMAASGKKYVVTEETPPVAFVFDPDPI
KDTDKKGHFYFRDRRVPEKSGIHSIMFQYNVSRQNIIYSNLIAINVQPGAPVKLAPESAP
GTPTVSNTARSASRTLLKQLKLVLKDQYDNPAGEHVNGEVVVRVAGEETQEEEVPQMVGG
SKEMTVELVRGVALVQNVTMQQNSPGRDGKQYFLQCSPKSLQLSRTNPIPPFNLSFMFYN
NVRKQEEMANLTREKDALLQTIRTYKQLFDTTQQLISEMKISVHEAKQSEQSLRMELRNQ
AVPASCLESIEKVDELLGIRMQERDETLNSPRRQCGLNPAPKGDQEILGKIGHLALVEDD
DIARVLSWHMASDMDCVVTVTTAKAKQVYAGSHGRQQVLPLDSIYRRNLPDWNRPLPHLR
GNRTNFVTKGNPVYARDMLIFPQDPDNCKLVFGMLLGETVILDSLDDANAYRQEVVKITH
CPTLLTRSGDRIRSNGKFGGVQNKAIPVEKMKGAIFGAPLPLAYHALCTQIDTLEKYREA
MIKRINAEDDLNFQLEAEELPEKQQQRQELQEAQEQFKDIEKRLGLKPTNFGNPTPPTER
RTRTANNVRSQPPPPYENESPPKRLRSNNRDSPSTVNGYGSSSGSDTPTRTSARRAAMAA
SAADIPVIKKQRR
NT seq
5982 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctggcgggagacctggcacacgctcgtcgggccaagacgcgatggacgccgaa
gaagagacctcagtcttcgtctacgaccgccgagagggagactaccccgagaagaagatc
cagcttggaggaatcttcaagttcgagtcgttcaaggcccgaattcgcgaggtattcaag
ctcaaaaatgaggaagagtttgtgattgtgacaaccaacagagaagagatcaaagataca
aagacatatgacaagctgatagaggatggcgacaccctgtatatcctgaacactgcggac
caagagctggcggcccccacgcaggagaggatcgactacctgcctcactacgacaccctg
gtcaagagtggcatgtacgagtactacgctagcgaagggcagaacccactaccctatgcc
tttgctgagttgattgacaacgctctagcagcaactgctgacaacgtgggagacaggaat
attgaacttcgcattattctggatgacaggatcgagggagggaaacactgcatctgtgtc
cttgacaatggccacggcatgacctctaaggacctgaatgactgggccgtctaccgcctg
tccaagttcaaccgcaaggacaggaggagaagcacgggtggggctgcacagtccgctccc
caggttaccgtggatacacgtacccgcgctgaacccaccgctggggaaagtgagttagga
ttttggagaccacggtccctgaacagtgaaatctcgtactttggtgtgggagggaaacag
gcagtattcttcattggaacaacaacaaggatgatcacgaaaccaaagaactccaaagac
gtccatgagttggtgatctcacaggaagattttgagaagaaggagaagaacaaggaaaag
atctacagtgggtacatcaggaacaggaagcctggcgacacctcccacatcagtccagag
gaagaccacatacggaagatcatctccgaagaaacagggagagagaacttcacagctgtg
gtggtgactaacgtgaacactgtgcacctcaagtttctcaaggactacatgaaatactgg
cccaaacaactcagtcacatctaccattactacctccatggaccacaagggaatactgct
gctgccgaaggggggaagagagctcgctgtgacagcccttcccagcacatccacattcag
ataaaactcatccagatgggccgcaaagagaagattgtggacctgagagagttagaggac
gacatgcagacacagtacatccagaaatctgcagacagcttcgagttcaaggccaccgta
gaggggacaggaatagtggaaggaatcctgcggtatcacccgttcctgtacgatagggag
acatatcctcctgatatgtatgctccacctgtggttgaagaagatgaggacgactgtgta
tcaactgaccgccccgcccgaggaaagagacccatttttgagtgctactggaatgggaga
ctcatcccatacacatttgtagacgatttcgagtggtgcagtccacccaagaagaggggg
gtgatcccagtagaatgttacaacaggatctctggttgtctcttcactaacgacaagttc
caggtgtccacaaacaagctgaccttcatggacctggaggtcaggctcaaggacaagaac
accacatactccatggtcaaacagggacaggaacagagagcaaagattgaccgtcagttt
tttgagtggttgaaggagtgccatgagaagtacgataagcaggtgaagttctgtgggttc
gggggctccatcacaaggcccgagttagcctctaagaaacagcaggctccttgggccgtc
ttcaagtctatcgagtgggatgggaaggtcttcaaggagggacaactggtgcgaactcag
cgtacagtcccgatcatctacggtaccattcagcgattcctgctccatggcgactatgaa
ggagaggtgttcgctaccggtggggagatggagattcgacaggagccgtcttccctatac
gatgaagtgaaagttctccacctgtccaagcttgaccgctccaccaccaaactacaggcc
aagaaatacatagaagaagaagaagcaaaactgccagacaaggtagtggttaagtggccg
gaaggggacagtcttcagaacaatgacaagataccagctgggagaacaataggtgccatg
aaggtggagatctttaaccggaagggagaggcgataaaccggttgccaggcggttcagga
ccgggttcggctggttctaggaaactcctggtggagctcaagatcatctggcactctccc
agtggtgactccatcattgtgtctcacatcagccagcatggaggaagatggccctactgg
ttcaggaaaatggagaatgttaagaacctagggaaacacaccttaagactacaggtggtg
atgaacgagagtgacaataccatcttcgctggcaaggagctcccctcactcaacatcaag
ttcactgtcacagaggcagcacctgacaagttcacagtaggtctgatggaccccccgttc
caagtgggacagcccttccagatcccactggagctacaagatgagtttggtcaccccaca
tctgctactaacaaactacagcctgtcttagaggccagtggtctggacctgagttacgag
ggtacagaggctaagggttcaacacttgtcattaagaaggttacagcactgggagatgtg
ggatcgcaccagggaaagaacttcaatctaaaggtcaccctaccaggattggaggaggac
actcaagttctcaaaatccgactcttaccaggaccccctagctccctccatgtgaagcct
actgatgacagcctacaggtagagaatgggaaggagctgagctttgatgtggaagtcaga
gataaagctggcaacatctcaactcaacctaagctagatgtcacatgcaagttcacagga
agctcaggcctgcccacctacagtgtagactgcagtaacacaggaagaggtgttctcaca
ggagagcccatacaagtcaggaacatgaagaaggaacagtggctcagggctgtcatatta
tgtccaagcttcagaggcattcctgcaatagagaagaaggtagtggtaacacccagcaca
cgagcatccaccctagaactctcatacatggaccaagaaaaggagacagtacaagtgaga
caccaagcaagtgtgacatgtactgcaggggaaactctggatggcctgactttcactgta
cttgatgaggcctcaagaattctaccaatcacagaggccacggctgccaaaattaaggtg
aactggacaccaagactgaacactaaggaggttcttaaggggaaccttcccgctattaag
gtccccctgtctgtcaccgagaccaagtactgtcaagttactctacacgaccactaccct
atcgaactgggattcactataagacctcaggcaggtgagggaattcacctgaggtgcacc
tgtacaggtgaacaggtgctgaggtatggagaaatgctgcagggagatattcacatcact
gtggtagatacacatggcaaccctaccaagctaacccagggaggtctgaagtacctgaat
gttgaggctgatggactggacacatctgcttgcagcaggtcactgggggagaaatcagac
cactttgtcctgaagaacatcaggttccacagtgaaggccccctaggtacgaaggagctg
tgcgtgacgtggagagacctgcaggagtttgtgaggcttgtgatagtgcctggcccacct
gtaggcatggagatcatagactggccagaagatgggccattgatggtgtataacggaact
gagtttgacaaaccgctagtggttcagttgattgatgctgccgggaacccgtcacaagag
tctggggtcggagttcaactggacaaggacaaaggattggagctgacaccatcaccccag
tgtgtgaagactgatgccagcggtcgagccaactttgggatcatggctgcctcaggaaaa
aagtatgttgtgactgaagagacacctcctgttgcctttgtatttgatcccgatcctata
aaggacaccgacaaaaaaggacacttctatttcagggataggagagtaccagaaaagtct
ggtatccacagtattatgttccagtacaatgtgtcgagacagaacatcatatacagcaac
ctaattgccatcaatgtccagcctggtgcaccagtgaagctggcccctgagtcggcccct
ggcacacctactgtgtccaacactgcacggtcagccagcaggacactcctcaagcagctc
aaactcgtcttaaaggaccaatatgataacccagcaggtgaacatgtgaatggagaagta
gtagtacgtgtggcaggagaggaaacacaggaggaggaggtaccacagatggtggggggg
agcaaggagatgactgtggagctggtcaggggggtcgcgcttgtacagaatgtaaccatg
cagcagaactccccaggtcgagacgggaagcagtacttcctgcagtgttcccccaagagt
ctacagctgtccagaaccaaccctattcctcccttcaacctatccttcatgttttacaac
aatgtgcgtaagcaggaagagatggcgaacctaacccgtgagaaagacgccctactgcag
accatccgcacctataaacaactcttcgacaccacacaacagctcatcagtgagatgaaa
atatctgtgcatgaggccaagcagtctgagcagtcccttagaatggagttgaggaaccag
gcagtaccagcctcatgtctggagtctatagagaaggtagatgagttactgggcatcagg
atgcaggagagggatgaaaccctgaacagtccccgcagacagtgtggactcaaccctgca
ccgaaaggggaccaggaaatccttggaaagatcggccaccttgccctggtggaagacgat
gacatcgcccgtgtgctgtcctggcacatggctagcgacatggactgtgttgtcacggta
accaccgccaaggccaaacaggtctacgccgggtcgcacggtcgtcagcaggtcctgcca
ctggactccatctacagacgcaacctcccagactggaatagaccacttccacatctaaga
ggtaacaggaccaactttgtgacgaaggggaacccagtctacgcacgagacatgctcatc
tttcctcaggaccctgacaactgtaaactggtgtttggtatgctgcttggagaaacagtt
attttggactcactagacgatgccaatgcctacagacaagaggtagtgaagatcacccac
tgtccgaccctcctgaccagatctggggacaggatcaggagtaacgggaagtttgggggg
gtgcagaacaaggccatacctgtggagaagatgaagggcgccatatttggtgcccccctc
ccactcgcatatcatgctttgtgcacacagatagatacactagagaagtacagagaagcc
atgatcaagagaataaatgctgaggacgatctgaacttccagctggaagcagaggaactc
cctgagaaacagcagcagagacaggagctacaggaggcacaggagcagttcaaggacatc
gagaaaagacttggactgaaacccacaaactttggcaacccaacaccccccacagagaga
aggaccagaacagccaacaatgtacgcagtcagccacccccgccatacgagaacgagtcc
ccaccaaagcgactacgatcaaacaatcgcgattccccttccaccgtgaacggttacggg
tcaagctcagggtccgacacgcccaccagaacctccgcgagacgagctgcaatggcggcc
agcgcggcggatattccagtcatcaaaaagcaacgtagataa
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integrated database retrieval system
