Branchiostoma floridae (Florida lancelet): 118420939
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Entry
118420939 CDS
T01074
Name
(RefSeq) ATP-dependent RNA helicase A-like isoform X1
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118420939
03012 Translation factors [BR:
bfo03012
]
118420939
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
118420939
5.6.2.6 RNA 3'-5' helicase
118420939
Spliceosome [BR:
bfo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118420939
Translation factors [BR:
bfo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118420939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
Dicer_dimer
HA2_C
nSTAND3
AAA_19
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
118420939
NCBI-ProteinID:
XP_035683925
UniProt:
A0A9J7LLH0
LinkDB
All DBs
Position
8:11763808..11780192
Genome browser
AA seq
1238 aa
AA seq
DB search
MADLKNFLYAWCGKKKITPNYDFRAAGSKQRQRFVCEVRVPGYDYVGAGNSTSKKDAQTN
AARDFVMFLVRTGEVSQAEVPAVEVPTLPAVETDGAGPSGAGPGGLPAGAPPAPHLAVAG
ERGGSQVYEYNKPYSGRSQDYQEYFERVDKRKVEEAETMDLNAGIHGNWTLDNAKQRLHQ
FMQQNRIQADYRYSPTGPDHNRSFVAEMTIFVKQLHRNISAREHGSNKKIAAQSAALSLV
RQLYHLGVLEAYTGITKKKEAEKVEHHVVLNPQVEQQLMGVLQEMELHPVPPPADPTQEL
SLLTEQKERFEPSLNKSAAGVVPWSPPLQNWNPWAGCNIDEGPLAHMTLEQLNHDLLNQL
QDQRNQDQTLQKMLKDRQALPIWESVDQVMNAIVNNSVVIIKGETGCGKTTQVPQYILDD
MIMKGKGAECNIIVTQPRRISAVSVAERVAQERGEDLGLSTGYSVRFDTVFPRPYGGILF
CTVGVLLRKMEGGMRGLSHLIVDEIHERDLNSDFLLVVLQGMVRAYPDMRIILMSATIDT
SLFSEYFGNCPVVDVYGRTHPVQQYFLEDCIQMTNFVAAPQERKKRKEKDDDDAVGDDDN
ENLNMVCSNEYSDQTKRSLSMLSEREMSFELIVVLLQYIRSLEVPGAILIFLPGWNLIFA
LLRYLQEHPEFGASGKYQLLPLHSQIPREDQHRVFLSVPSGITKVILSTNIAETSITIND
VVYVIDSCKAKMKLFTSHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEK
LETHTTPEIFRTPLHELSLSIKLLRLGAIGPFLARAIEPPPLDAVIEAEALLREMDALDS
NDELTPLGKILARLPIDPRLGKMVIMGCIFSCGDAMAAIASSTCFPEPWEVPVERRRLGW
VHKSFAGSRCSDHVAMLMAYQGWEEARSYGEDSEMNFCQRKSLNMATLRMTYEAKNQLKD
ILQMAEFPEECLLPHHFDHTGPDSKLDMVISLLTMGLYPNVCFHKEKRKLLTTEGRAALI
HKSSVNCSNREQTFPSPFFVFGEKIRTRAVSAKQMTMVSPVQLLLFGSRTVTTKEGDIKL
DDWITLKMSHTSAAAMCALRPSMDRLIVQACSQPETILEPQPLDEKLIGLIRSLSKANVG
QPVNEDGEGSSYAGSTYGGDYSGPPRKRYRFNTPDGRNGGGFRGGDRGGFRGGPGGGDFR
GGFRGGFGGGPRFGGDRGGFRGGFRGGYGMCQLIVLHK
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctgaagaatttcctgtacgcctggtgcgggaagaagaaaattactcccaac
tacgacttcagagcagctgggtctaaacagagacaacgctttgtgtgtgaggtgcgggtc
ccaggttatgactatgttggtgctggtaactcgacaagcaagaaggacgcacagacgaac
gctgcccgggactttgtcatgtttttggtgcgcactggtgaagtcagccaagctgaagtc
cctgctgtagaggttccaaccttgccagctgtagagacggatggagcaggaccgtcaggt
gcagggccaggtgggctgcctgcaggtgctccacctgcaccacatctggctgtagcaggg
gaacggggtggtagtcaggtgtacgagtacaacaagccctactctggccgaagtcaagac
taccaggaatactttgagagagtggacaagagaaaagtggaagaggctgaaaccatggat
ctgaatgctggtatccatggcaactggaccctggacaatgccaagcagcgtctgcaccag
ttcatgcaacagaacaggatccaggcagactatagatactctcccactgggcctgaccac
aaccggagttttgttgctgagatgactatctttgtcaagcagcttcaccgaaacatcagt
gcccgtgagcacggctccaacaagaagatagctgcccagtcggctgccctgtcccttgtg
cgccagctctaccatctcggagtgctggaggcctacacagggatcaccaagaaaaaagag
gcagaaaaggtggaacaccatgtggtgttgaacccccaggtagagcagcagctgatgggg
gtactacaggagatggagctgcatcctgtaccaccgcctgcagatcccacccaggagctg
agtctcctgacagagcagaaggagcgttttgagcccagtctgaacaagtctgcagcaggt
gtggtgccgtggtcccctcccctgcagaactggaacccctgggctgggtgtaacattgat
gagggtccactagcacatatgactttagagcagctgaaccatgatcttctgaaccagtta
caagaccagaggaaccaggaccaaaccctgcagaagatgctgaaggacagacaggccctg
cccatctgggagtcagtggaccaagtcatgaatgccatcgtcaacaactcagtagtcatc
atcaagggggagacaggctgtggcaagactacacaggtgccccagtacatcctggatgac
atgatcatgaagggtaagggtgcggagtgtaacatcatcgtgacgcagccccgccggatc
agtgccgtgtccgtagcggagagagtcgcgcaggagcgaggggaggacctgggcctcagc
actggctacagcgtcaggtttgacactgtcttccccaggccttatggagggatcctgttc
tgtactgttggtgttctcctgaggaagatggagggagggatgcgagggctgtcacatctg
atcgtggacgagatccacgagagagatctgaactcagatttcctgctggtggtgctacaa
ggtatggtgagagcctaccctgacatgcgtatcatcctcatgtctgccaccatcgatacc
agcctgttctctgagtacttcgggaactgtcctgttgtggatgtttacggccggacccac
cctgtgcaacagtatttcctggaagattgtatacagatgaccaactttgtggctgcgccc
caagagaggaagaaacgtaaagagaaggatgatgatgatgcagttggagatgacgacaat
gagaacctgaacatggtttgctccaacgaatactcagaccagacaaagaggtccttgtca
atgctcagtgagagagagatgtcctttgagctcattgtggttctcctgcagtacatcaga
agcctggaagtaccaggagcgatcctcatcttcctgccagggtggaacctcatctttgca
ctcctcagatatctgcaagaacacccagagtttggagcctctgggaagtaccagttgtta
cccctgcattcccagatccccagagaggaccaacacagggtgttcctgtctgtaccctca
ggcatcaccaaggtgatcctgtccaccaacattgctgagaccagcatcaccatcaacgat
gttgtctatgttatagactcctgcaaggccaagatgaagctgttcacatcccataacaac
atgaccaactacgccacagtgtgggcatctaagactaacctggagcagcggaagggacgg
gcaggtcgtgtcagacccggcttctgctttcacctctgctcaagagccaggtttgaaaag
ctggagacccacacaacccctgagatattccgcacacctctccatgagctgtccctctcc
atcaagctgctgcgactgggagccatcgggcccttcctggccagggccatcgaacctcca
cccctggacgctgtcattgaggcagaggctctcctcagagagatggatgctctggactcc
aatgatgaactgactccccttggcaagatcctggctcgcctgcctatagaccctcgcctg
ggcaaaatggtcatcatgggctgcatcttcagctgtggagatgccatggcagccatcgcc
tccagcacatgtttccccgagccgtgggaggtgccagtggagcggaggcggctcggctgg
gtccacaagtcgtttgccgggagccgctgtagcgaccatgtcgccatgctgatggcctac
caaggctgggaggaggcacggtcctatggagaagacagtgagatgaacttctgccagcgc
aagtcgctgaacatggccaccctgcgcatgacgtacgaggccaagaaccagctgaaggac
atcctccagatggcagaattccctgaagagtgcttgttgccacaccactttgaccacaca
ggaccagactccaagttagatatggtgatatccctgctgaccatgggtctgtaccccaac
gtgtgcttccacaaggagaaacgtaagctgctgactacagaaggccgtgctgcgctcatc
cacaagtcctctgtcaactgtagcaacagggaacagaccttcccctcacctttctttgtg
tttggggaaaagatccgaaccagagcagtgtcagccaaacagatgaccatggtgtcccct
gtgcagctgctactgttcggctcccgcacagtcaccacaaaggaaggggacatcaagctg
gatgactggatcaccttaaagatgtcccacacgtctgcggcagccatgtgcgctctgcga
ccatctatggaccgcctgatcgtgcaagcctgcagccaaccagagaccatcttggagcca
caaccgctcgatgagaagctgattggcttaatcaggagcctgtctaaggccaatgttggt
caaccagttaatgaggatggggaggggtcatcttatgctggctcaacatatggtggtgac
tacagcggtcctccacgcaagaggtaccggttcaacacccctgatggtaggaacggaggg
gggttccgtggtggtgacagaggcggcttcagggggggtccaggaggaggggacttccga
gggggtttcaggggcgggtttggcggtgggccacgtttcggtggcgatcggggaggattc
cggggcggatttagaggaggatatggtatgtgtcaacttatagtacttcataaatga
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