Bacteroides fragilis YCH46: BF2403
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Entry
BF2403 CDS
T00202
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03030
DNA replication
bfr03410
Base excision repair
bfr03420
Nucleotide excision repair
bfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BF2403
03410 Base excision repair
BF2403
03420 Nucleotide excision repair
BF2403
03430 Mismatch repair
BF2403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfr03032
]
BF2403
03400 DNA repair and recombination proteins [BR:
bfr03400
]
BF2403
Enzymes [BR:
bfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BF2403
DNA replication proteins [BR:
bfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BF2403
DNA repair and recombination proteins [BR:
bfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BF2403
NER (nucleotide excision repair)
GGR (global genome repair) factors
BF2403
MMR (mismatch excision repair)
DNA ligase
BF2403
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BF2403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
SHE3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAD49152
UniProt:
Q64TM7
LinkDB
All DBs
Position
2774657..2776654
Genome browser
AA seq
665 aa
AA seq
DB search
MTVKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYKDENSPTMR
VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKALNEDFEICCEMKYDGTSISL
TYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWEVFEA
LNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHYENLQE
AAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNLGFTAK
SPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCPECGSKLIRYEGEAAHY
CPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIHDTADLYRLTTDDIRGL
DRMGDKSAENIIKGIMQSKEVPFERVIFALGIRFVGETVAKKIAKSFKDIEELENADLET
LINIDEIGEKIARSILNYFANESNRKLVDRLKTAGLQLYRPEEDLSGHTDKLAGQSIVIS
GVFTHHSRDEYKDLIEKHGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEF
LKLIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaaagaaaaaatagagcaactccgtctccaactccatcagcataattacaat
tattatgtgctgaatgccccggaaatctcagataaagaattcgacgatttaatgagggaa
cttcaggacctggaacaggaacatccggaatataaagacgaaaactcacctactatgcgt
gtaggtagcgatatcaataagaattttacccaagtagcgcacaaatatccgatgctttca
ttgtcgaatacatattcggagaatgaagtaaccgacttctatgacagagtgcgtaaagct
ttgaatgaagattttgagatttgttgcgagatgaagtatgatggtacctctatctcttta
acttacgaaaatggtaaactgatccgcgcggtaacccgcggtgacggtgaaaaaggggac
gatgtaacagacaacgtaaagaccattcggagtattcctctcgtcctacatggagataat
tatccggaagttttcgaaattcgtggagaaatcttgatgccatgggaagttttcgaagca
ttaaaccgggaaaaagaggcccgcgaagaacctctctttgcaaatccgagaaatgccgca
tcgggaacattgaaattacaaaattccgccatcgtggcttcccgtaagctggatgcctat
ctctattatctgcttggcgataatctgccgactgacggacattatgaaaatctgcaggaa
gcagccaaatggggatttaagatttccccgttaatgcgtaagtgccagacactacaagaa
gtcttcgactttatcaactattgggacgtagagcgcaaaaacctgaacgttgctacagac
ggaatcgtactgaaagtaaacagcctcaagcagcaaaggaatcttgggttcacagccaag
tctccccgctgggccattgcctataaatttcaggctgaacgtgcactgacccgcttgaac
atggtaacctatcaggtagggagaaccggcgccgtaacaccggtagccaatctcgacccg
gtacaactttcgggcacagtagtgaaacgcgcatcattgcataatgcggatatcattgaa
ggactcgatttgcatataggcgatatggtctacgtagaaaagggaggagaaatcatcccc
aaaataaccggtgtggatacgtcggtccgcttcatgatcggtgaaaaggtaaaattcatc
actcactgtccggaatgtggcagtaagctgataagatacgaaggagaagccgcccattat
tgtccgaatgagaccgcctgtccaccacaaatcaaaggaaaaatagagcacttcatcagc
cggaaagcaatgaatatagacggattaggacctgaaaccgtcgacatgttctaccgttta
ggactgattcatgacacagccgacctctatcgactgacgacagatgacatcagaggcttg
gaccgtatgggagacaaatctgcggaaaacatcattaaaggaatcatgcaaagcaaagag
gtaccttttgaaagagtaatttttgcattaggtattcgttttgtaggcgaaacggtagct
aaaaaaatagccaaatcttttaaagacatagaagagttggaaaatgcagatctggaaact
ctgatcaatatcgatgaaatcggtgaaaaaatagctcggagtatccttaactactttgcg
aatgaatcaaatcgtaaattggtggaccgattaaaaacagcaggattgcaactatacaga
cctgaagaagacttgagcggacataccgataaattggccggacaatccattgtcatcagt
ggagtattcacccaccattcaagagatgaatacaaggatcttatcgaaaaacacggtggc
aagaacgtgggaagcatctcttctaaaaccagttttattctggccggagacaatatggga
cctgcgaaattagaaaaagcaagtaaactgggaattaaaattatgaacgaagaggaattt
ttaaagcttatatcgtaa
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