Brachyistius frenatus (kelp perch): 138618653
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Entry
138618653 CDS
T10614
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
138618653 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bfre03000
]
138618653 (kdm2ab)
04121 Ubiquitin system [BR:
bfre04121
]
138618653 (kdm2ab)
03036 Chromosome and associated proteins [BR:
bfre03036
]
138618653 (kdm2ab)
Enzymes [BR:
bfre01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
138618653 (kdm2ab)
Transcription factors [BR:
bfre03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
138618653 (kdm2ab)
Ubiquitin system [BR:
bfre04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
138618653 (kdm2ab)
Chromosome and associated proteins [BR:
bfre03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
138618653 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
138618653 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
LRR_6
DUF7885
Cupin_8
C1_1
LRR_8
Cupin_1
LRR_4
Motif
Other DBs
NCBI-GeneID:
138618653
NCBI-ProteinID:
XP_069550638
LinkDB
All DBs
Position
Unknown
AA seq
1323 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLECGRFSSDLIRKMEGKEF
TFEYIQREGLRDPIIFEKADGLGIQMPDSDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYNIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQKYSLGIG
LTRADLETSDHNGNGTSNGVDSDAENEELKTKEEEVQEEQAAQVNTPQHVLTPFEQEGLW
NLLGKLEGLPTHKKCVPAGIRNAAALLDDMRAVLKERVSHNPKLAYTGEPIVKWPKRPSW
YQPPIPPPPVIYRPRLAPTLHKPLGQRPTKRSSISALRRRRVRCKRCAACCRKECGTCQY
CHDMRKFGGPGRMKKSCIMRQCLAPALPNTARCAICGEGEMDESNPSTFSLMECSVCSQI
AHRQCIKEPGEGKINKDLPSCWECPKCYQGKGSASESSSDEESEESEGSASLPQSKLAYR
EGIGVGEGARRGRRSRSPGRPTAPPPSQKLLLQHQQNRKRASALEHRLKKRIKLERSKIL
TKQSSLDRSSRLLGSRILSRLRSPTSRLAQGRGRGSTWASGSSYHSAPTGSGSGSRSVEQ
QQQQQQPPQQQQQSSSLGLVLEPKGEPRRGRGRGVRLRGGGAGRGIRGGRSHADLDEESE
DSSSSSSSSNNNSSSSSSSDDDEEEESGQNSGRGGDKENQPQSRRGGQTAKEREEDSSEV
ANQNGAEEGEEEELEQDSQTVDKDGSYPKVTLQRPTRAKQDPSAIVPKLEAIAPQTATST
IHSQTRALVRPPIRNRGSDHSKWLMPPQTRSGQTYSRTSHPERLDASKRTRLSVPAKLSN
GASSSSSSKLPHQRVPLSALQEGGGEADRESVGNGPGCEREVWVSVFRYLSRADLCVCMA
VCKNWHKWCLDKRLWSRIDLSVKHTITPQALKGIVKRQPVTLDLSWTNISKKQLNWLVDH
LPGLKDLMVAGCSWSSISALCSSGCPLLRSLDLRYADGVKDSQIRELVTPPGCDNRSQLR
TMQCLRLAGLDISDSTLRLVIRHMPHLTKLDLSHCNSITDHSIDLLTAVGSSTRNTLTEL
NLGGCSKLTDACLKYLRRLSCISLLDLRGCKGVSRKACEAFITELSVNTLYCLSDETLIQ
RIS
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcctcatacacggtacagcaaacgtctgcgtacaggcacacgccgccgctac
caggacgatggcatttcagatgatgaaattgaagggaagcgaatgtttgacctggatgag
aagttggagtgtgggaggtttagctctgatctgatcagaaaaatggagggtaaagagttc
acatttgaatacatccagcgggaagggctcagggaccccattatctttgagaaggctgat
ggccttggcatacaaatgccagactctgacttcagtgtgagtgatgtcaagttgtttgtg
ggtagtcgacgtatcgtggacgttatggacgtgaacacccagaaggggatcgagatgtcg
atggctcagtggcgacgctactatgagacacctccatcagaaagagaaaaactgtacaac
gtcatcagcctggagttcagccacaccaggctcgagaatctggtcaaacgaccggcttcg
gtggaccttattgactgggtggacaacatgtggccgcggcatctcaaggagagacagaga
gactccactaatgctatcatagacatgcattatcccaaagtacagaagtactgtctcatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcacttcggtctggtat
cacattctgcgaggaggaaaggtgttctggctgattccacccacaccacagaacctggag
atgtatgagaactgggttttatcaggaaaacagggagacatcttcttgggggataagtgt
catgactgtcagaggatagagctcaagcagggcaacaccttcataatcccatcagggtgg
atccatgctgtgtacaccccagaggacacactggtgtttggtgggaacttccttcacagc
tttaatatccccatgcagctcaacatctacaacattgaggatcgcacacgggtgccagca
aagttccgctacccattttattatgagatgtgctggtatgtcctggagagatatctttac
tgtctgaccaacatctcccacctcaccccagagttccaaaaatactcccttggcattgga
ctgacccgggctgaccttgaaaccagtgatcacaacgggaatggcacctccaatggtgtt
gacagtgacgctgaaaacgaggagctcaagaccaaggaagaagaagtccaagaagaacag
gcggctcaagttaacacacctcagcatgtgctgaccccctttgagcaggaaggactgtgg
aaccttttagggaaattggaggggctgcccacccacaaaaagtgcgtccctgcagggatt
aggaacgctgcagccctgctcgacgacatgagggctgttttgaaggagcgagtcagtcac
aaccccaagctagcctacactggagagcctattgtcaaatggcccaaaaggccgtcatgg
taccagccccccatccctccgccgcctgttatttaccgtcctcgcctggcccccaccctc
cacaagcctctgggtcagagacccaccaaacgctcttccatctccgccctgaggcgcaga
cgggtgaggtgcaagcgctgcgctgcctgctgccgaaaggagtgtggcacgtgccagtac
tgccatgacatgaggaagttcggtgggccgggacgcatgaagaagagctgcatcatgagg
cagtgtctagcgcccgccttgccgaacacagctcgatgtgccatatgtggagagggagaa
atggatgaatcgaatccgagcactttctccctcatggagtgttcggtctgttcgcagatc
gcccatcgtcaatgcattaaggaacctggtgaggggaagatcaacaaggacttacccagc
tgctgggaatgtcccaaatgttaccaaggcaaaggctcagcatcagagtcttccagtgat
gaggaaagcgaagagtcggagggctccgcctccttgccacagtccaaacttgcgtaccgg
gaaggcatcggtgtaggcgaaggagcgagacgagggagacgtagcagatccccaggccgg
cccacagcaccaccaccttctcagaaactgctactgcagcatcaacagaaccgcaaaaga
gcaagtgcactggagcacagacttaagaagaggataaaactggaacggagcaaaatctta
acaaaacagtcgtctctcgatcgttcttcgaggctgctgggctccaggattttgtcccgg
ctgcgctctccaacgagcagacttgctcagggcagaggccggggctccacctgggcgagt
ggctcctcttaccacagcgctccaacagggtccgggtccgggtccaggtccgtcgagcag
cagcagcagcagcagcagccgccgcagcagcagcagcagtcgtcttccctcggtctggta
cttgagccgaaaggagagccacgcagagggaggggacgaggcgtgaggctgcggggggga
ggagcaggacgaggcatcagaggtggtcggagccatgcggacttggatgaggagagcgag
gacagcagcagcagcagcagcagctccaacaacaacagcagcagcagcagcagcagcgac
gatgatgaggaagaggagagtgggcagaacagcgggagaggaggggataaagagaaccag
ccgcagtcgaggagaggaggacagacagccaaagaaagggaagaggattcgagcgaagtg
gccaaccaaaacggagcggaggagggtgaggaggaggagttggagcaggacagtcaaaca
gtggacaaagatggctcatatcctaaagtgacactccaaaggccaaccagggcaaagcag
gacccatcagccatcgtccccaaattagaggctattgcccctcaaactgccacttccaca
atacacagccagaccagagccctcgtcagaccccccattagaaatcgtggttccgaccac
tccaaatggcttatgccaccgcagactcgcagcggacaaacgtattctcgtacgtcccac
ccagagagactggacgcctctaaaagaacgagactgagcgtgccggctaagctgagcaac
ggcgcttcttcttcctcatcatctaagcttccccatcagcgcgtccctctgtccgccctg
caggaaggagggggtgaggcggacagggagagcgtcggtaacggcccgggctgtgagagg
gaggtgtgggtgtctgtgtttcgctacttaagtcgagcagatctctgcgtctgcatggct
gtctgcaagaactggcacaaatggtgtttagacaaacggctttggtcgcggattgacctg
agcgtcaagcacaccatcactcctcaggctctaaaaggcatcgtgaagagacagccagtc
acacttgacctctcctggaccaacatctccaaaaaacagctcaactggctcgttgaccac
ctgcctgggctgaaggatctgatggtggcaggttgttcctggtcatcgatttcagctctc
tgctcctctggttgccctctcctccgttctctggacctgcgatatgcagacggagtcaaa
gactctcagatcagggaactagtcactcctccaggctgtgacaatcgcagccagttgcgg
accatgcagtgtctgcgactagccggcctggacatcagtgactccactctgcgtctggtg
atccgccacatgccacacttgacaaaactggatctctcccactgcaacagtatcaccgat
cactccatcgatctgctgaccgccgtgggctcgtccacccgaaacacactcacagaactt
aacctgggaggctgcagtaaactgacagacgcctgtctgaagtatcttcgccgcctctct
tgcatctcactgctcgacctgcgaggctgtaaaggtgtctcccgcaaggcctgtgaggcc
ttcatcaccgagctatcagtcaacacgctctactgcctatcagatgaaacattgatccag
cggatatcctaa
DBGET
integrated database retrieval system
