Brachyistius frenatus (kelp perch): 138619685
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Entry
138619685 CDS
T10614
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bfre Brachyistius frenatus (kelp perch)
Brite
Chromosome and associated proteins [BR:
bfre03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
138619685 (smchd1)
DNA repair and recombination proteins [BR:
bfre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
138619685 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138619685
NCBI-ProteinID:
XP_069552437
LinkDB
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Position
Unknown
AA seq
1964 aa
AA seq
DB search
MNCVPQPPPAAALQRGGDVKRIRVYDLRYDESITKEMTTTGLDFNGFLRLLHKEFGIRLY
ETFVLVTTDRTTLDFDKFKELPDGSTLYLLLQEHQVLSAATEEEISFTPHFDTLLLSGAH
GYHNQDGKNSLPYTLAELIDNALSATAKNNGTRTIEIRLLFDETAGKPAVIVLDNGCGMT
SKQLNNWAVYRLSKFARESSSFTSNQEDYVRPDPVPRSLNSDISFFGVGGKQAVFNIGNS
ARMISKPKGSPDVHELVLSKEEFEKKERNKEDVYSGIIKNRKPGDSSHVTKDDGRFLHAL
IAEEKGNESFTAVVITGVQPEHITHLKNDFDVWTRELAHIYHYYIHGVSGQHLESGSTRS
DRLANIDIVVTLRERPLRPPRVINLREVKDDVQTLYITAAADTFEFRASTGPDSGSVEGI
IRYHPFLYDRETYPDDPYAAQAPIDDDDGNDIDHEAVLQSHVRGKRPVFECFWNGRLIPY
CKVFEFDWCSRPSKGSTLPLECFSRFSGVLFTDDRFTVNANKLNFIDLESKLQNKNTIFT
TVVTGQKTSKRGNIQKEFMQWLLNCHEKHDKQVEFLGYKETITRTDLQTKKMQNPWATFS
SIKCDGKTYKTGQRVKSQKTQPILYGTVARFLLYGHHDEDVFATGGQVELIREPKELYNQ
TKIIAISKIDKAATDEAIQTNINNDRAKLPEKLQFTWTEGHPWPQDAVRPSGTVFGPFNV
NILNRNEQRLSRMPSSGQGAGTRLVIKRTIVLHGPNGDEEVDTSIANYSGTWGYSFKKFE
NLIDLGKYTLFLNTMTNDENNSTVFGGAQLPSFSLRFTIKEGPADSFSIGAVNSTLRVGV
PFDIPLQMQDLYRHPTSPPTNLQPVLKCSGLELSFETVDSSRTKSTIKRVKALGKVLNYQ
QCKSYDLKVTLPGLKIDTQTIKISLLPGNPHSFHVMPAENPIKVENGKWAKFNVEVHDEA
GNVTANPKQIVCCQVQGYPPVETDCSRTGCGELLTNPINMKIIKGQSQKLEVKFVMLNHK
NVALVTKELKVEPSTRVFLMELCSQNGNEKLMLRNNEKIEWLAGGLLENLYYKLHDEAGR
EVPLTAQIASMIKVNWTNNVNLKDLVQGKLPDLQVSTQVQEERFYQVSYKDQSVSVSFNI
VPRPDEPSQLQVTPLQSTVRLGETFPENIHLELLDQYNNVTKTLRSTCVNHMTVEAEGLD
KAAIAFAWQESSSSVAVTGLRFQSGSLGPREMCFSYGDYETRVMVKVVAGVPAQLKLVSE
PQQPLQVLNNHSISTPFLIQLCDEWGNPSPDLRVVVELRSSPSTLKVTAAVTSQPVNTEG
KASFTITKLSGPKGYYQLEFRGSFNKKPIPGPSVNLTVVPDPNEPVSLLVEYDTTANFLA
GGIFPVFLVTVVSDEGSPITTFNPAAVSMFLREVAPSGNTPQTGVELKCSKPMENERNDC
FHFRGKEIPTTVGKHVIQFLLRIDGKNDLTSNEIPIDVVANQPVKLGPDSQPGTPVVFYS
RDIASRTLVENMTLRITDVYGNAAGQDLDGRVVVSVKCSTGERNKSLPLFEGQTSTFQTS
LVKGKAHIPRLAIMENSPGESSSTCILVFQPDAATLPTTLDPFELPFLFCNDAENQRKVS
ELTRKKDELINVVAKYDDNFKAFNELLELLIGNFQIVNEQVSDLRNRLHTCNVRIARPLC
LQYIDTILSEKTAEVNAILPNRVCSIHDNFRGQQDVLGKVGRLALVHDAAAARVISWHMS
GHMDCVVTKTTEAARRIYENTRGQQQVIPLDSIYLTPGNRSLPHIRNGRQLFQPRGNPVH
AREHLVYPHDGVSCNIVFKTFLGDTILIDDLDSANSYRRAVVQNRMQCPTILTRQGDRVS
SRGKFGGTQNKAPPINELKVFGAPYPPHYHTLNKEIDLLRQYRSAVKKLKESEKERDRHR
NEMNAPEMKRKQQEMEEKKRELEEIERQLGVRPGKRRKLGDNSE
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtgttccccagcctccccctgcagcagccctgcagagaggaggcgatgtcaag
aggatccgtgtgtacgacctccgctacgatgaaagcataacgaaggagatgaccaccact
ggtttggacttcaatggctttcttcgacttctgcacaaggaatttgggatccgcttatat
gagacgtttgtgttggtcaccactgacagaaccaccttggattttgacaaatttaaggag
cttccggatggcagcaccctctacttgttgctgcaggagcaccaggttctgtcagctgca
acagaggaggaaatctcttttactcctcattttgatacgctgctcctgagtggcgcgcat
ggctaccataatcaggacggcaagaactcattaccctacacgctcgcagaacttatcgac
aacgctctttcagcaacagcaaaaaataatgggacgaggacaatagaaatcagactgctg
tttgatgaaactgctgggaaacctgccgtcattgttcttgataatgggtgcgggatgacc
tcaaagcagcttaacaactgggcagtgtacagactctctaaatttgccagggaaagcagc
tcatttacaagtaatcaagaagattatgttcgtcctgatccagtaccacgcagtctcaac
agtgatatatccttcttcggagttggaggaaaacaggctgttttcaacattggaaactcg
gccaggatgatcagcaaaccaaagggctctccagatgttcatgagctggttttatcaaaa
gaggaatttgagaaaaaagaaaggaacaaagaggatgtttacagtgggataatcaaaaac
aggaagcccggtgactcctcacatgtgaccaaggatgacgggcgcttcctccacgccctc
atcgccgaggagaaggggaacgaaagcttcacagctgtcgtcattacaggagtccagccc
gagcacatcacccatctgaaaaatgattttgatgtgtggaccagagagctagcgcacata
tatcactattacattcatggagtcagtggacaacacttggaaagcgggtccacacgctcc
gatcgtctcgctaacattgacattgtggtgactttgcgggagaggcctctcagacctccg
cgtgtgataaacctcagggaggtgaaagacgacgtacagactctgtacattaccgctgct
gcagacacgtttgagttcagagcctcgaccgggccggacagcggctcagtggagggcatc
atccgctatcatcccttcctctacgacagggagacttaccccgatgacccgtacgctgcg
caagcacctattgatgatgatgatggtaatgatatcgatcatgaggctgtactccagagt
cacgtcagagggaagaggccggtctttgaatgtttctggaatggacggctcataccttac
tgcaaagtgtttgagttcgactggtgctctcgacccagcaaaggatcaactttgcctcta
gagtgtttcagtcggttttctggggtgcttttcacagacgacagattcacggtcaacgca
aacaagctcaacttcatcgacctggagtcaaaactgcagaacaagaacacgatcttcacg
accgttgtgactggacagaaaacctcaaaacgaggaaacattcagaaggagttcatgcag
tggcttctcaactgtcacgagaagcacgataagcaagtggagtttctgggctacaaggag
accataacgcgaacagatttgcagactaagaaaatgcagaatccctgggcgacgttctct
tccatcaaatgtgacggcaaaacgtacaagacaggccaacgcgtgaagtctcagaaaacg
cagcccattctgtacggcaccgtggctcggtttttgctgtacggacatcacgatgaagac
gtctttgccacaggaggacaggtggaattgattcgcgagcccaaagaactttacaaccag
accaagatcatagccatttccaagattgacaaagccgccaccgatgaagccatccagaca
aacatcaacaatgaccgcgccaagcttccagagaagttgcagttcacctggacagaagga
cacccgtggcctcaggatgcagttcgtccctctggaacagtttttgggccgttcaacgtt
aacatcctgaacagaaatgaacaaaggttatccaggatgccgtcatcaggacagggggca
gggacaagactggtcattaagcgcacaatagttctccatggtcctaatggagatgaagaa
gttgacacttccattgccaactattcaggaacttggggttactcgttcaaaaaatttgag
aatctgattgacctggggaagtacacactgtttctgaacaccatgacaaatgatgaaaat
aattctaccgtctttggaggcgcacagcttcccagcttttctctaaggttcaccatcaaa
gagggtcctgccgacagcttcagtatcggcgcagtgaactccactcttcgtgtgggagtg
ccgttcgacattcctctgcaaatgcaagatctttatcgccacccaacgtcgcctcctacc
aacctccaacctgtgctcaaatgcagtggcctggaactgagttttgagacagtggacagc
agtaggaccaagtccaccatcaaaagggtcaaagcactaggaaaagtcctgaattaccag
caatgcaagagttatgacctgaaagtgaccctgcccggcctcaaaattgacacacagaca
atcaagatcagtcttcttcctggtaatccacattccttccatgtgatgccagcagaaaac
ccaatcaaagttgagaacggaaaatgggccaagtttaatgttgaagttcacgatgaagct
ggaaacgtcaccgctaaccccaaacagatcgtttgctgccaggttcaggggtatccaccg
gtggaaacggactgcagcagaacaggatgtggcgagcttttgacaaaccccataaacatg
aaaataatcaagggacaatcacaaaagctcgaagtcaaatttgtgatgctgaatcataag
aatgtagcgttggtcacgaaggagttgaaggtggaacccagcacgcgggtcttcctgatg
gagctctgcagtcagaatggcaatgagaagttgatgctgaggaacaatgaaaagattgaa
tggctggccggaggcctgcttgagaacctgtactataagctgcatgatgaggctggcaga
gaggtgcctctcactgctcaaatagcctccatgatcaaggttaactggacgaacaatgtc
aatctgaaagatttggtccaggggaagctgcctgatcttcaggtgtccacgcaggtgcag
gaagagcgcttctaccaggtgtcctacaaagaccaaagtgtgtctgtctccttcaatata
gtgcctcgtccagatgaaccatcgcagctacaagtgaccccgctgcagagcacagtgaga
ctcggtgaaactttccctgaaaacatccacctggagcttctggaccaatataataacgtc
accaagacgcttcgctccacctgcgtgaaccacatgactgtggaagctgagggtctggac
aaagcggccatcgcctttgcatggcaggagagcagcagctctgtagcggtgacgggactt
cgttttcagtccgggtctctcggccccagagagatgtgcttcagctacggagactacgag
acccgagtcatggttaaagtggtcgctggagttcctgcacagcttaaactagtcagcgaa
cctcaacagcctttgcaggtgttgaacaaccacagcatctccacaccattcctcatccag
ctgtgcgatgagtggggaaacccgtctccagacctaagggtcgtggtggaattaagatcg
tcaccctcgacactgaaggtgacggcagctgttacttcacaacctgtgaatacagaaggg
aaagcctctttcaccattacaaaattgagtgggccaaaggggtactatcagctggagttt
agaggttccttcaacaagaaacccatccccgggccatcagtgaacctcactgtcgtcccc
gatcccaacgaacccgtcagcctgttggtggagtacgacaccactgccaactttctcgct
ggaggcatcttcccagttttcttggtgaccgtggtgtccgatgaaggaagtccgatcacg
acctttaaccctgccgccgtgtccatgttccttagagaggtagcgccatcaggaaatacg
ccacaaacaggcgtcgagctgaagtgcagtaaacccatggaaaatgaaaggaacgactgt
tttcacttcagaggcaaagaaatccccacaactgttggaaaacacgtcatacagttcttg
ctgcgtattgacggaaaaaacgacctgaccagcaatgagatccccatcgacgtggtggcc
aatcagcccgtcaaactgggacccgactcgcagccggggacgcccgtcgtcttctacagt
agagacattgccagccgaacactggtggagaatatgactctgaggataacggatgtgtat
ggaaacgcagcggggcaggacctcgacgggagggtggtcgtctctgtaaagtgctctact
ggagagagaaacaaaagcctcccgctgtttgaaggacaaaccagcacatttcaaactagc
ttggtgaaggggaaggcccacatccccaggctggctatcatggagaacagccccggtgag
agcagcagcacgtgcatcctcgtcttccaaccagacgcggcgacgcttcccacgacgctc
gatcccttcgaactccccttccttttttgtaatgatgcagagaaccaacgaaaagtgtct
gaactaaccaggaagaaagatgagctcatcaacgttgttgctaaatatgacgacaacttc
aaagcatttaatgaactccttgaactgctgataggtaatttccagattgtaaatgagcaa
gtgtctgacctcagaaatcggctgcacacatgcaacgtgagaattgcacgacctttatgt
ttgcaatacatcgacacaatcctcagcgagaagaccgctgaagtcaatgcgattctgccc
aatcgagtctgctccatccatgacaacttcagggggcagcaggatgttttgggaaaggtc
ggccgcctggcgctcgtgcacgacgccgccgctgcgagggtcatctcctggcacatgtcg
gggcacatggactgtgtcgtcaccaagacgacagaagcagcgcggaggatctatgaaaac
acgcggggccagcagcaggtcatccccctcgacagcatctacctgacaccaggaaacagg
tcgctgccacacataagaaacggccgccagctctttcaaccccgcgggaacccggtccac
gccagagagcacctcgtttacccccacgatggcgtgagctgtaacatcgtgtttaaaacc
ttcctcggagacacgattctgattgatgatctggactctgcaaacagctacagaagggcg
gtggtgcaaaacaggatgcaatgtcccactatcctgaccaggcagggcgacagggtcagc
tcccggggcaagttcggaggcacacagaacaaagccccaccgatcaacgagctaaaagtg
ttcggagccccctacccaccgcactaccacactcttaataaagaaatagacctgctccgt
cagtaccggtcggctgtgaagaagctgaaggaaagcgaaaaggagcgagaccgccacaga
aatgaaatgaatgctcccgagatgaagagaaagcaacaagaaatggaggagaaaaagagg
gagctggaggagattgagagacaactcggagtaagaccagggaaacggaggaaattggga
gacaactcggagtaa
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integrated database retrieval system
