Brachyistius frenatus (kelp perch): 138627009
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Entry
138627009 CDS
T10614
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138627009 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfre03041
]
138627009 (eftud2)
Spliceosome [BR:
bfre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138627009 (eftud2)
Complex C
U5 SnRNP specific factors
138627009 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
138627009
NCBI-ProteinID:
XP_069565151
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDEDDDLDAEDRDVDEGDEDDDDEPADADDDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIGELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTTLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVHHIPSPQEGAKNKIEHTYAGGMDSDLGEAMADCDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQICTLGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatttgtatgatgagtttggcaactacatcggtccggagctggactctgac
gatgaagacgacgatctggatgcagaggacagggacgttgatgagggtgatgaggacgac
gacgacgagcctgccgacgctgacgacgacgtcccgggcatggaggtggtcctgcacgag
gataagaagtactatcccacggcggaggaggtttatgggcccgaggtggaaactatagtc
caggaggaagacacgcaacctctgacggagcccatcatcaagcctgtgaagaacaagcag
ttcacgctgatggaacaggaacttcctgccaccgtttacgacatggaatttcttgcagat
ctgatggacggtccagagctgatccgtaacgtcaccctctgcggtcaccttcaccacggc
aagacctgttttgtggattgcctgattgaacagacacacccagaaatcaggaagagagat
gatgtggatctccggtacacagacatcctcttcacagaacaagagagaggagttggcatc
aaaagcacccctgtcacaatggtcctgcccgactccaggggaaaatcctaccttttcaac
atcatggatacaccaggccacgtgaacttctccgacgaggtcacgtcgagcatccggatc
tcagacggcgttgtcctcttcatagacgcagcagaaggagtgatgctgaacacggagcgt
ctgatcaaacacgccgttcaggagcgtatggccatcaccatctgcatcaacaaggtggac
cggctcatcggggagctcaaactgccgcccacggacgcttattataaactccgtcacatc
gtggatgaggtcaacggtttgctcagcacatattcgacagatgagaacttagtggtgtct
cctcttcttgggaacgtgtgcttcgccagctctcagtacagcatctgcttcacgctgggc
tcctttgcaaagatctactcggacacctacggtgacatcaactataatgagtttgccaag
aggctctggggagacatttacttcaaccccaaaactcgcaagttcacaaagaaagccccc
agtagcaactcccagcgcagctttgtggaatttgtgctggagcctctctacaagatcctc
tcacaggtggtcggggatgtggatacgactctcccccgagttctggatgagctgggcatc
cacctgactaaggaggagctgaagctgaacattagacccctgctgaggctcgtctgtaac
cgcttcttcggagagttcacgggcttcgtggacatgtgtgtgcatcacatcccctcgcca
caggagggcgcaaagaataagatcgagcacacctacgctggaggtatggactccgacttg
ggggaggccatggcggactgtgatcctgatggtcctttgatgtgtcacaccacaaagatg
tacagcacagaggatggggtccagttccacgcgtttggccgggtgctgagcgggaccatt
caggcgggtcagcccgtcaaggttttaggagagaactacacgctcgaagatgaggaggac
tcccagatctgcacgttgggccgtctctggatttctgttgccagataccaaattgaagta
aatcgagtgcctgctggtaactgggttctcatcgagggctgtgaccagccaatcgtaaag
accgccacaatcacagagcccagagggaacgaagaggctcagattttcaggccgctgaag
ttcaacacggcatcagtcatcaagattgcagtcgagccggtcaacccatcagagctgcct
aaaatgctggacggactgaggaaggtcaacaagagctacccgtctctcaccacgaaggtg
gaggagtcgggagagcacgtcatcctggggacaggagagctttacctggactgtgtcatg
cacgacctgcggaagatgtactccgagatcgacattaaagtcgctgacccagttgtgact
ttctgtgagacagttgtggagacatcatctctcaagtgcttcgctgagacaccaaataaa
aagaataagatcaccatgatcgccgagcccttggagaaggggctggctgaggacatcgag
aacgaagtggtgcagatcacatggaacaggaagaagctgggagagtttttccagacaaag
tacgactgggatctgctggctgccaggtccatctgggccttcggaccggacaccacggga
ccaaacattctcgtagacgacacgctgccctctgaggtggacaaggcgctgctgggctcg
gtcaaagacagcatcgttcagggcttccagtggggcaccagggaaggtcctctgtgtgac
gagcccatcaggaatgtgaagtttaagatcctggacgcagtcatcgctcaggagcctctc
caccgagggggaggccaggtcatccccacggccaggagggtggtgtactccgctttcctc
atggccactccgaggttgatggagccatattacttcgtggaggttcaggctccagctgat
tgtgtgtcagcggtctacacggtgctggctcgaaggagaggtcacgtcacccaggacgca
cctattccaggctctcctctctacacaattaaggctttcatccctgccatcgactccttt
ggctttgagacggaccttcgcacgcacacacagggtcaggccttcgctctgtccgtgttc
caccactggcagatcgtccccggtgaccccctggacaagagcatagtgatccggcctctt
gagcctcagcccgctcctcacctggcccgagagttcatgatcaagacccgaaggcgcaag
ggtctgagcgaagacgtgagcatcagcaagttcttcgacgatcccatgttgttggagctg
gcaaaacaagacgtggtgcttaactatcccatgtga
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