Brachyistius frenatus (kelp perch): 138629266
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Entry
138629266 CDS
T10614
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
138629266 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfre03400
]
138629266 (lig4)
Enzymes [BR:
bfre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138629266 (lig4)
DNA repair and recombination proteins [BR:
bfre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
138629266 (lig4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
C8-3_MUC4
Motif
Other DBs
NCBI-GeneID:
138629266
NCBI-ProteinID:
XP_069568967
LinkDB
All DBs
Position
Unknown
AA seq
907 aa
AA seq
DB search
MEGTSKSAAAAPPSVAAQVPFLDLCNTLEKIQKSKLRPDKSKILGDFIESWRKFHSALHK
DEPKTTDSFYPAMRLTVPSFERERMAYGIKENMLAKLYIDVLGLPKNGPEAHKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCSGQGNLSIKEVNDFLDSVAINNASKKKDRVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHADAADLYNVNTDLNKVCQQLHDPSVSL
SEVSIGLFSAFKPMLAGVANIRNVEKQMGNSPFFIETKLDGERIQLHKDGDVYKYFSRNA
FDYTQQFGGSPLEGSLTPYVHNVFKSHVVNCILDGEMMAYNPTADTFMQKGNKFDIKRLT
DDSELQTCFCVFDVLMVNDRKLGKETLRKRHETLQTVFAPVKGRIQVVPKTDGRTVREVV
DALNDAIDSREEGIMVKDPLSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTFCRIGSGYTMKELYDLGLKLAEHWKVYRKNDPP
ASLLCGTEKPEVYIEPRNSVILQVKATEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCTT
LAELDQFRSKASGKLASRHLCIDADEPQKKKRKLPAKNKKAFGVVDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKSELEKGVARCGGIVVQNPGKDSYCVIAGVENMRVKNLIAAN
QHDVVRAAWLLECLDLKEVVPWQPRHMIHMSPSTREHFAKEYDGYGDSYFVDTDERQLRE
VFGRIGAASGVDAGRVEERCGWDDLPTSMFRPFTAYMDADVGDPESAAAAAASCLEIRAQ
EFLYHGGTVAQKLEEGVSHVVVAEETRLRDLRTVRRRFRKKFKIVRDSWVTDSIEAGYVT
NDTDYSV
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacgtccaagagcgccgctgcggcgccgccgtctgtcgccgctcaggttcct
ttcctcgacttgtgcaacaccttagagaaaatccagaagtctaaactccggccggataag
tcgaagatcctcggggatttcatcgagtcgtggcggaagtttcattcggccctccacaaa
gacgagcccaaaaccacggactccttctaccccgccatgcgcctcacggtgccgtctttt
gaacgagagcgaatggcttacggcatcaaagagaacatgctggcgaaactctacatcgac
gtgttgggcctcccgaagaacggcccggaagcccacaagctgttgaactaccgcgcgccg
accacgtcccagggagaagccggggacttcgccggcatggcgtatttcgtgctgaagaaa
cgatgcagcggccaaggaaacctcagcatcaaggaggtcaacgactttctggactcggtg
gccatcaacaacgccagcaagaagaaagaccgggtgaagaagagcctgctgcacctcatc
acccagagctcggcgctcgagcagaagtggctcatcaggatgatcctgaaggacatgaag
ctcggcgtcagcaaggaaaccgtcctgcaagtcttccacgccgacgctgccgacctctac
aacgtcaacaccgacttgaacaaggtgtgccagcagctccacgacccctccgtgtccctg
agcgaagtctccatcgggctgttctccgccttcaagcccatgttggccggcgtggcgaac
atccgcaacgtggagaagcagatgggcaacagtcctttcttcatcgagaccaagctggac
ggggagcgcattcagctgcacaaagacggcgacgtgtacaagtacttcagccgaaacgcc
ttcgactacacgcagcagttcggagggtcgccgctggagggatcgctgacgccgtacgtc
cacaacgtcttcaaaagccacgtggtgaactgcatcctggacggcgagatgatggcgtac
aacccgacggcggacaccttcatgcagaaagggaacaagttcgacatcaagaggctgacg
gacgactccgagttgcagacgtgcttctgcgtgttcgacgtgctgatggtcaacgaccgg
aagctcggcaaggagacgctgaggaaacgccacgagacccttcagacggttttcgccccg
gtcaaggggaggatacaagtggtgccgaagaccgacggcaggaccgtgcgggaggtggtg
gacgctctcaacgacgccatcgacagcagagaggaagggatcatggtgaaggatcctctg
tccgtctacaagcccgacaagcggggcgaaggatggctgaagataaagccggagtacgtg
gacggcttgatggacgagctggacctgctgatcgtcggcggctactggggcaaagggagg
cgaggcgggatgatgtcgcacttcctgtgcgcggtcgccgaagctccgaagcccggcgag
aaaccgtcggttttccacaccttctgccgcatcggctccggctacaccatgaaagagctg
tacgacctcggcttgaagctcgccgagcactggaaggtctaccgcaaaaacgacccgccg
gcgtccctcctgtgcggaacggagaaacccgaagtctacatcgagccgcgcaactccgtc
atcctccaggtgaaggcgaccgagatcgtcggtagcgacatgtacaaaaccaactgcacc
ctgcgctttccccggatcgagaagatccgcgaggacaaggagtggcaccagtgcacgacc
ctggcggagctggatcagttccgcagcaaggcatccgggaagctcgcgtcgcggcacctt
tgcatcgacgccgacgaaccgcagaagaagaagcgcaagctgccggccaagaacaagaag
gcgttcggcgtcgtcgaccacttcaagccccaggacctgtccggggttaccaaggagacg
gacatgtttgaggacgtggagttctgcatcctgaacggcaccgaggatcatcccaagtcc
gagctggagaagggcgttgccaggtgcggcggtatcgtggtccagaacccgggcaaggac
tcctactgcgtgatcgccggcgtggagaacatgcgcgtgaagaacctgatcgccgccaac
cagcacgacgtggtccgggccgcctggctgctggagtgcctggacctgaaggaggtggtt
ccctggcaaccgcgccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacggctacggcgacagctacttcgtggacacggacgagcggcagctgcgggag
gtgttcggccggatcggcgccgcctcgggcgtggacgccgggcgggtggaggagcgctgc
ggctgggacgacctccccaccagcatgttcagacccttcacggcgtacatggacgccgac
gtcggagaccccgagagcgccgccgccgccgccgcttcctgcctggaaatcagggcgcag
gagtttctctaccacggaggaacggtggcgcagaagttggaggaaggagtctcgcacgtc
gtcgtcgccgaggaaacgagactccgggatttgaggactgtgaggcgccgcttcaggaag
aaatttaagattgtaagagactcgtgggtgactgattcaatcgaggcagggtatgtgacg
aatgacaccgactactcggtttga
DBGET
integrated database retrieval system
