Brachyistius frenatus (kelp perch): 138636424
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Entry
138636424 CDS
T10614
Symbol
kdm2bb
Name
(RefSeq) lysine (K)-specific demethylase 2Bb isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
138636424 (kdm2bb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bfre03000
]
138636424 (kdm2bb)
04121 Ubiquitin system [BR:
bfre04121
]
138636424 (kdm2bb)
03036 Chromosome and associated proteins [BR:
bfre03036
]
138636424 (kdm2bb)
Enzymes [BR:
bfre01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
138636424 (kdm2bb)
Transcription factors [BR:
bfre03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
138636424 (kdm2bb)
Ubiquitin system [BR:
bfre04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
138636424 (kdm2bb)
Chromosome and associated proteins [BR:
bfre03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
138636424 (kdm2bb)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
138636424 (kdm2bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
Cupin_8
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
138636424
NCBI-ProteinID:
XP_069580527
LinkDB
All DBs
Position
Unknown
AA seq
1445 aa
AA seq
DB search
MAQAAETCAESGRKLRSICRRMYDEDDDLSDAEEIANIRGFSVEEKLLSDRYSADFVHLM
EGKDFTYEYVQREALRIPLIFKGKDELGIRMPDPEFTVSEIKGLVGSRRSVDVMDVSTQK
GSEMSMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDQVDWVDNMWPPDL
KQSQTEASNVISEMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGQKVFWLVPPT
PHNLALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPVDTLVFGG
NILHSFNIPMQLTIHEIENRTKVHSKFRFPFYCEMCWYVLERYLHCLTKRSYLSPEVRKE
PADYETKGKTESPSSDSRSQDINEDSCGTQIRDYQGEKPERAAQDGPGSPDNGKGQHLKA
VLSVDSEDSCNPGSTSLDFPKTPSDSPASEPQNKWTHLTEFELNGLRTLVEKLESLPENK
KCVPVGIENPQALLEDVKVVLKEHADDDPKLAITGVPVVSWPKKTIKLWSRREGCRPDSS
SRSRRRRRLQPCQFAVSWTGSEKAAMAMSLSADDEDYDSDSEQPRPPNRPKPKMAASPAS
AVKLSASRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIA
PVLPHTAVCLVCGEAGKEDTVEDEDEKFNLMLMECSICNEIVHPNCLKVKDSNGVVNDEL
PNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEPRLNRDSKEEADPPAVAPTAVSA
LNPSAAVKRKAERDVNSKRNDEEPPKKRPSLLSLDGGSRPRLEDNPLRKKRKLFDTNDEP
VILKKKKKLSKVDDPFSSKLLRQIKTENDHGDEEDEQEDHEEDGLSLDRMHLKEKNEYDD
DDQEEDAEEEEVGTKERDSPAEDRAKALLSPLLRTSTARESDQSSTTSPRAGPSSESGDA
QERSSAQLKARHQRRRLPNKEMSKDFNQDIPKTEVSLSNQRHGSVKTEDGPANHNRRPLK
NEDSAANQNRKPLKTEDSTTNLSRRALKTEEGSANQNRQPLKTEDSLANRNHRPIKSEPE
NEVDEQKPRWPLNNGSGDLGDWLRHRGREVNGTPRGYSPLGWSRSTPITPICPRPLPCRS
PPKCIQMERHVIRPPPISPPPDRLPLNDGEAHVMRRETWMTVFGHLTHRDLCVCMRVCRT
WNRWCCDKRLWKHINLNRCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGL
RVLLLSGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRSK
LRNVEDLRLAGLDITDTSLRLIIRYMPSLSKLDLSYCNHVTDQSVNILTAAGTTSRDSLT
DINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCDQFIAEMSVSVQFELIEEKL
LQKIS
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggccgcggaaacgtgcgcagagtccggacgcaaactgcgctccatctgccgg
aggatgtacgacgaggacgacgacctgtcggacgcggaggagatcgccaacatccgcggc
ttcagcgtggaggagaagctgctcagcgaccgctacagcgcggacttcgtccacctaatg
gaggggaaagacttcacttatgaatacgtgcagagagaagctctccgcatcccgctcatc
ttcaagggcaaagatgagctggggatcaggatgcctgatccagagttcacagtgagtgaa
attaaaggattagttggcagccgtcgctcggtggacgttatggacgtcagcactcagaaa
ggctccgagatgagcatggctcagtttgtccgttattatgagacgccagaggaagagcgg
gacaaactcttcaatgtcatcagcttagagttcagtcacacgaagctggagaacctgatc
aagcggcccacggtggtggatcaggtggactgggtggacaacatgtggcctcctgatctg
aaacaaagccaaactgaagcctccaacgtcatctcagagatgaagtaccccaaagtgcaa
cggtattgcctgatgagtgtaaagggttgctacacagacttccacatcgattttggggga
acttcagtttggtatcatgtattcaagggacagaaagtgttctggcttgtgcctccaaca
ccccataaccttgctctgtatgaggactgggtcctgtcaggcaagcagagcgatatcttc
ctgggagaccgggcggacggatgccagagagtggagcttaaacagggatacaccttcttc
atcccatctgggtggattcatgctgtctacactcctgtggacactctggtgttcggaggc
aacatcctgcacagctttaacattcctatgcagcttaccatccatgagattgagaacagg
actaaggttcattccaaattccgtttccccttctactgtgagatgtgctggtacgtcctg
gagagatacctgcactgcctgaccaaacgctcctacctttctccagaggtccgtaaagag
cccgcggactatgagacaaaggggaagacagagagcccctcctctgactccaggagccag
gacatcaacgaggactcatgtgggactcaaatcagggattaccaaggtgaaaaaccagag
agagctgctcaggatggtcccggctctcccgacaatgggaaaggccagcacctcaaagct
gttctatctgttgactcggaggacagctgtaatcccggctccacctctctagattttccc
aaaactccgtccgactcaccggcctcagagcctcaaaataaatggactcatctgacagag
tttgagctcaacggactcaggacactggtggagaagctggagtcactccctgaaaataag
aagtgtgttcctgttggaatagagaacccacaggccctgctggaggacgtgaaggttgtc
ttaaaggaacatgcagatgacgaccccaaattagcaattacgggagttcctgtggtatcc
tggcctaagaaaactataaagctgtggagcaggagggagggctgtcggcctgacagcagt
agcaggagtagaaggaggaggagactgcagccatgtcagtttgccgtgagctggacgggc
tctgaaaaagcagccatggccatgtcgttgagcgctgatgatgaggactacgactcagac
tctgagcagccgcggcctcccaaccggcccaaacctaagatggcagcatctcctgcatca
gcagtcaagctgtcggccagccggggaacatccggcgcccggcggaggaggacgcgctgt
cggaagtgcgaggcgtgtctgcggacggagtgtggagagtgccacttttgtaaagacatg
aagaagtttggcgggccgggccgaatgaaacagtcctgcatcatgagacagtgcattgct
ccggtgctgccgcacacagcagtctgtctggtctgtggagaagccgggaaggaggacacg
gtggaggacgaggacgagaagtttaacctcatgctaatggagtgctcaatctgcaatgag
attgtccaccctaactgtctcaaggtgaaagactccaatggagtcgtcaatgatgagttg
ccaaactgctgggagtgcccaaagtgtaaccatgcagggaaaacagggaaacaaaaaagg
gggccagggtttaagtatgcgtcaaaccttcctggctcgctactgaaagaaccgcggctg
aaccgggattcaaaagaggaggctgacccgcccgcggtggctccaaccgccgtcagcgcc
ttgaacccctcagctgctgtgaagagaaaggcagagcgggacgtaaactccaagaggaac
gatgaggagcctccaaagaaacgtccctccttgctgtctctggatggggggtcccgaccg
agacttgaggacaatccgctgaggaagaagaggaaactttttgacaccaatgacgaaccg
gtcattttgaaaaagaagaaaaagctttccaaagtggatgatccatttagttcaaagctg
ttgcggcaaattaagacagagaatgatcacggtgatgaagaagacgagcaggaggatcac
gaagaagatggattgtctttggacaggatgcatctaaaggagaaaaatgagtatgatgac
gatgaccaagaagaagatgcagaggaagaggaggtgggaacaaaggagagagacagtcct
gcagaggacagagctaaagccttgttaagtccactgctgagaacatccacggccagagag
agtgaccaatcctccaccacgtctcccagagccggaccgagcagcgagtccggagacgcc
caggagaggagctctgctcagcttaaagcccgccatcagcgccgacgtcttcccaacaaa
gagatgagcaaagactttaaccaggacattcccaagacagaggtcagtctgagcaaccag
aggcacggttcagtgaagacagaggacggtccagccaatcacaatcgccgaccattgaag
aatgaggactctgcggccaatcagaaccgtaaaccactaaaaacagaggactcgaccacc
aatctgagccgtagagcccttaaaacagaggaaggttcggccaatcaaaacagacagccg
ctgaaaacggaggacagcttggccaatcggaatcacaggccgataaagtcggagcctgag
aacgaagtggacgagcagaagcctcgatggcctctgaataacggcagcggcgatctgggt
gactggctgcgacaccgggggcgcgaggtgaacgggacgccacgtggttactcgccgctc
ggctggagcagaagcacgcccatcacaccgatctgcccgcggccgctcccctgccggtcg
ccaccaaaatgcatccaaatggagcgtcacgtgatccgcccccctcccatcagcccccca
cctgacagactgccactgaacgacggcgaagcgcacgtgatgcgacgcgagacgtggatg
acggtgttcggtcacctgactcacagagacctctgtgtctgcatgcgtgtctgtcggacc
tggaacaggtggtgctgcgacaaaaggctctggaagcacatcaatctgaaccgctgtaag
tccatcacacctctgatgctgagcggcatcatccggagacagcccgtcactctggacctc
agctggaccaacatctccaagaaacagctgagctggctcatcaacaggcttccaggtctg
cgtgtgctgctgctgtcgggatgctcctgggtggccgtctcggcactttgcacctccagc
tgtcctctcctgcgaactctggacgtccagtgggtcgaaggactgaaagacgcccagatg
agagacctgctgtcgcctcctacagataataggccaggtcagttagacaacaggagtaag
ctgcgtaatgtggaggacttgcgtctggcaggactggacatcaccgacacatctctgcgc
ctcatcattcgttatatgccctcgttatcgaagctggatctcagctactgcaaccacgtc
accgaccagtccgtcaacatcctgaccgctgcagggacgaccagcagagactcgctcacc
gacatcaacctgtcagtttgtaaccgggtcacagaccagtcgctgacctatttcaagcgc
tgtgggagcatttgtcacatcgacctgcgttactgcaaacaggtgaccaaggaaggttgt
gaccagttcatcgcagaaatgtccgtcagcgtgcagtttgaactgatagaggagaagcta
ctgcaaaagatcagctga
DBGET
integrated database retrieval system
