Bacteroides fragilis NCTC 9343: BF9343_2404
Help
Entry
BF9343_2404 CDS
T00239
Symbol
ligA
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfs
Bacteroides fragilis NCTC 9343
Pathway
bfs03030
DNA replication
bfs03410
Base excision repair
bfs03420
Nucleotide excision repair
bfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BF9343_2404 (ligA)
03410 Base excision repair
BF9343_2404 (ligA)
03420 Nucleotide excision repair
BF9343_2404 (ligA)
03430 Mismatch repair
BF9343_2404 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfs03032
]
BF9343_2404 (ligA)
03400 DNA repair and recombination proteins [BR:
bfs03400
]
BF9343_2404 (ligA)
Enzymes [BR:
bfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BF9343_2404 (ligA)
DNA replication proteins [BR:
bfs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BF9343_2404 (ligA)
DNA repair and recombination proteins [BR:
bfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BF9343_2404 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BF9343_2404 (ligA)
MMR (mismatch excision repair)
DNA ligase
BF9343_2404 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BF9343_2404 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
SHE3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
CAH08185
UniProt:
Q5LCI0
LinkDB
All DBs
Position
2885879..2887876
Genome browser
AA seq
665 aa
AA seq
DB search
MTVKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYKDENSPTMR
VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKALNEDFEICCEMKYDGTSISL
TYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWEVFEA
LNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHYENLQE
AAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNLGFTAK
SPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCPECGSKLIRYEGEAAHY
CPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIHDTADLYQLTTDDIRGL
DRMGDKSAENIIKGIMQSKEVPFERVIFALGIRFVGETVAKKIAKSFKDIEELENADLET
LINIDEIGEKIARSILNYFANESNRKLVDRLKTAGLQLYRPEEDLSGHTDKLAGQSIVIS
GVFTHHSRDEYKDLIEKHGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEF
LKLIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaaagaaaaaatagagcaactccgtctccaactccatcagcataattacaat
tattatgtgctgaatgccccggaaatctcagataaagaattcgacgatttaatgagggaa
cttcaggacctggaacaggaacatccggaatataaagacgaaaactcacctactatgcgt
gtaggtagcgatatcaataagaattttacccaagtagcgcacaaatatccgatgctttca
ttgtcgaatacatattcggagaatgaagtaaccgacttctatgacagagtgcgtaaagct
ttgaatgaagattttgagatttgttgcgagatgaagtatgatggtacctctatctcctta
acttacgaaaatggtaaactgatccgcgcggtaacccgcggtgacggtgaaaaaggggac
gatgtaacagacaacgtaaagaccattcggagtattcctctcgtcctacatggagataat
tatccggaagttttcgaaattcgtggagaaatcttgatgccatgggaagttttcgaagca
ttaaaccgggaaaaagaggcccgcgaagaacctctctttgcaaatccgagaaatgccgca
tcgggaacattgaaattacaaaattccgccatcgtggcttcccgtaagctggatgcctat
ctctattatctgcttggcgataatctgccgactgacggacattatgaaaatctgcaggaa
gcagccaaatggggatttaagatttccccgttaatgcgtaagtgccagacactacaagaa
gtcttcgactttatcaactattgggacgtagagcgcaaaaacctgaacgttgctacagac
ggaatcgtactgaaagtaaacagcctcaagcagcaaaggaatcttgggttcacagccaag
tctccccgctgggccattgcctataaatttcaggctgaacgtgcactgacccgcttgaac
atggtaacctatcaggtagggagaaccggcgccgtaacaccggtagccaatctcgacccg
gtacaactttcgggcacagtagtgaaacgcgcatcattgcataatgcggatatcattgaa
ggactcgatttgcatataggcgatatggtctacgtagaaaagggaggagaaatcatcccc
aaaataaccggtgtggatacgtcggtccgcttcatgatcggtgaaaaggtaaaattcatc
actcactgtccggaatgtggcagtaagctgataagatacgaaggagaagccgcccattat
tgtccgaatgagaccgcctgtccaccacaaatcaaaggaaaaatagagcacttcatcagc
cggaaagcaatgaatatagacggattaggacctgaaaccgttgacatgttctaccgttta
ggactgattcatgacacagccgacctctatcaactgacgacagatgacatcagaggcttg
gaccgtatgggagacaaatctgcggaaaacatcattaaaggaatcatgcaaagcaaagag
gtaccttttgaaagagtaatttttgcattaggtattcgttttgtaggcgaaacggtagct
aaaaaaatagccaaatcttttaaagacatagaagagttggaaaatgcagatctggaaact
ctgatcaatatcgatgaaatcggtgaaaaaatagctcggagtatccttaactactttgcg
aatgaatcaaatcgtaaattggtggaccgattaaaaacagcaggattgcaactatacaga
cctgaagaagacttgagcggacataccgataaattggccggacaatccattgtcatcagt
ggagtattcacccaccattcaagagatgaatacaaggatcttatcgaaaaacacggtggc
aagaacgtgggaagcatctcttctaaaaccagttttattctggccggagacaatatggga
cctgcgaaattagaaaaagcaagtaaactgggaattaaaataatgaacgaagaggaattt
ttaaagcttatatcgtaa
DBGET
integrated database retrieval system
