Buchananella felis: ABYF36_06910
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Entry
ABYF36_06910 CDS
T10900
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfy Buchananella felis
Pathway
bfy03030
DNA replication
bfy03410
Base excision repair
bfy03420
Nucleotide excision repair
bfy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABYF36_06910 (ligA)
03410 Base excision repair
ABYF36_06910 (ligA)
03420 Nucleotide excision repair
ABYF36_06910 (ligA)
03430 Mismatch repair
ABYF36_06910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfy03032
]
ABYF36_06910 (ligA)
03400 DNA repair and recombination proteins [BR:
bfy03400
]
ABYF36_06910 (ligA)
Enzymes [BR:
bfy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABYF36_06910 (ligA)
DNA replication proteins [BR:
bfy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABYF36_06910 (ligA)
DNA repair and recombination proteins [BR:
bfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABYF36_06910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABYF36_06910 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABYF36_06910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABYF36_06910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
KOW6_SPT51-2
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
XEO16969
LinkDB
All DBs
Position
1781394..1783808
Genome browser
AA seq
804 aa
AA seq
DB search
MDHLVDAEKRAGELRQMIAQARGVYYRPEGDAAEPLYSDAQYDAAVRELRDLEARFPQLI
SPDSPTQTVEEPLADRGEVAATESGGGVGEAGGASAFAPVVHGERMLSLEDVFDFDEVAA
WGERVGATTLTAEPKIDGLAVSITYENGVLVQAATRGDGRVGEDVTAQARTIANLPASLA
GGPHPAHVEVRGEVYIPVAEFEQFNAARAAAGEKTFMNPRNAAAGSLRQKDAAQTAKRPL
RFLAHGVGALRLETAGDDAAFAPPPTQSGWYALLAAWGLPTIPGTRVVSGSAGALDYIRE
LGEERARLPFLIDGVVLKVDGLAEQEELGLTSRTPRWAVAYKYPPQEVHTRLLDIAVDVG
RTGRVTPYGVMEPVLVDGSMVARATLHNGFEVTRKDVRIGDTVVLRKAGDVIPEILGPVE
RARTGHEVVFVMPTNCPACGAVLAPTNEGEKDLRCPNVALCPAQLRGRVEHLASRGALDV
EGLGEEGARALTNPDANRQDAVDALLRGGALWIDREAHYLRAPEGVDPADWDVAERTAAA
HALLDRLAPVQAAPLTSEAGIFHLTPEDLRQVRIFRPAVGKGAGENDVAWVRAFWTTPSA
PRKDGSVAKPSELSKSAAALLANLAAARTKELWRFLVALSIRHVGPVAARALAARFGSLA
AIEGSIALHDLVELADVEGVGPIIAASLRDWLATERGQQIIAAWREAGVELADAPPAESE
EAAPQTLAGLTIVATGALQGYTRDSIGATIALHGGKAASSVSKKTDYVLAGEKAGSKLTK
AQTLGVRVIDEDEFEVLRSGGTLD
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
gtggaccacctggttgacgccgagaagcgggcgggcgagctgcgccagatgatcgcgcag
gcgcgcggggtctactaccggcccgagggggacgcggccgagccgctctactccgacgcc
cagtacgacgccgccgtgcgcgagctgcgtgacctggaggcgcgcttcccgcagctgata
agcccggactcgcccacgcagaccgtggaggagccgcttgccgaccgcggcgaggtggcc
gccactgagagcggcggcggggtgggggaggcgggcggagcgtcggccttcgccccggtg
gtgcacggggagaggatgctctcgctggaggacgtgttcgacttcgacgaggtcgccgcc
tggggcgagcgcgtcggcgccaccacgctgactgcggagcccaagatcgacggcctggcc
gtctccatcacctacgaaaacggcgtgctggtgcaggccgccacgcgtggggatggccgc
gtgggggaggacgtcacggcccaggctcgcaccatcgccaacctgccggcctcactggcg
ggcggtccgcacccggcgcacgtggaggtgcgcggcgaggtctacatccccgtggcggag
ttcgagcagttcaacgccgcgcgcgccgcagccggggaaaagaccttcatgaacccacgc
aacgcggcggccggttcgctgcgccagaaggacgcggcgcagaccgccaagcggccgctg
cgattcctggcccacggggtgggcgccctgcgcctggagacggcaggggacgacgctgcc
ttcgcgccgcccccaacgcagagcggttggtatgcgctcctggcggcctgggggctgccc
accatcccgggcacgcgggtggtgagcggcagcgcgggtgccctggactacatcagggag
ctgggggaggagcgcgcccgcctgcccttcctgatcgacggggtggtgttgaaggtggac
ggcctggccgagcaggaggagctgggcttgacctcgcgcaccccgcgctgggcggtggcc
tacaagtacccgccccaggaggtgcacacgcggctgctggacatcgccgtggacgtgggg
cgcacggggcgggtgaccccctacggggtgatggaaccggtgctggtggacggttcgatg
gttgcccgcgccacgctgcacaacggtttcgaggtgacccgcaaggacgtgcgcatcggt
gacacggtggtgctgcgcaaggccggggacgtgatcccggagatcctgggcccggtggag
cgggcgcgcacgggccacgaggtcgtcttcgtgatgcccaccaattgcccggcctgcggg
gcggtgctggcgcccacgaatgagggggagaaggacctgcgctgccccaacgtggccctg
tgcccggcgcagctgcgcgggcgggtggagcacctggcctcgcgtggcgccctggacgtg
gagggcctgggggaggagggagcgcgggccctgaccaacccggacgccaaccggcaggac
gccgtagacgcgctgctgcgcgggggggcgctctggatcgaccgcgaggcccactatctg
cgcgcgccagagggcgtggacccggcggactgggacgtggccgagcgcaccgccgccgcc
cacgccctgctcgaccgcctggcaccggtgcaggctgcgcccctgaccagcgaggcgggg
atcttccacctcaccccggaggacctgcgccaggtgcgcatcttccgtcccgccgtcggc
aagggggccggggagaacgacgtggcctgggtgcgcgccttttggaccaccccgtccgcg
ccgcgcaaggacggcagcgtggccaagccctccgagctgtccaagtccgccgccgccctg
ctggccaacctggcggccgcccgcaccaaggagctgtggcgcttcctggtggctttgtcc
atccggcacgtgggcccggtggcggcgcgcgcgctcgcggcccgctttggttccctggcg
gccatcgaggggtcgattgcgctccacgacctggtcgagctggccgacgtcgagggcgtc
gggccgatcatcgcggcctccctgcgggactggctggccaccgagcgcggccagcagatc
atcgcggcctggcgcgaagccggggtggagttggccgacgctccgcccgccgagtctgag
gaagcggcgccccaaactctggccgggttgacgatcgtcgccaccggggcgctgcagggc
tacacgcgcgactcaatcggggccacgatcgctctccacggcgggaaggcagcgtcgtcc
gtgtctaagaagaccgactacgtgctggcgggcgagaaggcgggctcgaagctcaccaag
gcgcagacgctgggggtgcgggtgatcgacgaggacgagttcgaggtgctgcgcagcggg
ggcacgctggactag
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