Paraburkholderia atlantica CCGE1002: BC1002_1778
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Entry
BC1002_1778 CDS
T01217
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03030
DNA replication
bge03410
Base excision repair
bge03420
Nucleotide excision repair
bge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BC1002_1778
03410 Base excision repair
BC1002_1778
03420 Nucleotide excision repair
BC1002_1778
03430 Mismatch repair
BC1002_1778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bge03032
]
BC1002_1778
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_1778
Enzymes [BR:
bge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BC1002_1778
DNA replication proteins [BR:
bge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BC1002_1778
DNA repair and recombination proteins [BR:
bge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BC1002_1778
NER (nucleotide excision repair)
GGR (global genome repair) factors
BC1002_1778
MMR (mismatch excision repair)
DNA ligase
BC1002_1778
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BC1002_1778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
Hint
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ADG15842
UniProt:
D5W8U7
LinkDB
All DBs
Position
1:complement(1981802..1983865)
Genome browser
AA seq
687 aa
AA seq
DB search
MARSSVPSFATSAPAERAAWLRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHP
DLIVPDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPP
VPVDYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVP
HVLDVRGEVLMFKRDFERLNERQRAAGQREFANPRNAAAGSLRQLDSKITAQRPLSFFAY
GIGVLDGIEMPPTHSELLDWYKEMGLPVNGERAVVQGAKGLLGFFHAVGEKRDRLPYDID
GVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEP
VFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPTDAREFVMP
TQCPVCGSAIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ
NLVRTPADLFNLGFATLAELDRFADKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTA
KDLAKHFGSLDPIMDASLEALLEVNDVGPVVAESIHQFFAEDHNRTVIEQLRAPGRVTWP
EGPPAPKAPQGVLAGQTVVLTGTLPNLSREDAKEMLEAAGAKVAGSVSKKTSYVVAGADA
GSKLAKAEELGIPVLDEDGMRKLLEGH
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatcctccgtcccttctttcgcaaccagcgctccggccgaacgggccgcgtgg
ttgcgcgcggaactcgaacacgcgaactacgcgtactacgtgctcgaccaaccggaccta
ccggatgccgagtacgacaagctgttcaaggagttggagcgcatcgaggccgagcatccg
gatctgatcgtgcctgattcgccgacgcagcgagtcggtggcgaggccgcgagcggcttc
gagccggtcgtccacgatcagccgatgctgtcgctgaacaacggtttcgctgacgaagac
atcgtcgcgttcgacaagcgcatcggcgacgcgctcggcaacaacgcgagcgagccgccg
gtgcccgtcgactacgcggccgagctgaaattcgacggtctcgctatctcgctgcgctat
gtcgacggcgtgttcgtgcaggcgtccacgcgcggcgacggcacgaccggcgagaacgtc
accgaaaacgtccgcacgatccgctcgattccgctgaagctgaagggcaagcgcgtaccg
cacgtgctcgacgtgcgcggcgaagtgctgatgttcaagcgcgatttcgagcgcctgaac
gaacgccagcgcgccgccgggcaacgcgaattcgcgaacccgcgcaacgcggcggccggc
agcttgcgccagctcgattcgaagatcaccgcgcagcggccgctgtcgtttttcgcgtat
gggatcggcgtgctcgacggcatcgagatgccgcccacgcatagcgaactgctcgactgg
tacaaggagatgggcttgccggtcaatggcgagcgcgcggtcgtgcagggcgccaaaggc
ttgctcggcttcttccacgcggtcggcgagaagcgcgacaggctgccgtatgacatcgac
ggcgtggtctataaggtcaaccggcgcgacgagcaggacaggctcggcttcgtatcgcgc
gcgccgcgcttcgcgctcgcgcacaaatttcccgcgcaggaagcgctgacgaagctcgtc
gcgatcgacgtgcaggtcggccgcaccggtgcgatcacgccggtcgcgcggctggagccg
gtgttcgtcggcggcgcgacggtcacgaacgcgaccttgcacaacgaagacgaagtgcgc
cgcaaggatattcgcatcggcgatacggtgatcgtgcgccgcgccggcgacgtgattccg
gaggtggtcagcgcgctgctcgaccggcgtccgaccgacgcgcgcgagttcgtgatgccg
acgcagtgtccggtgtgcggctcggcgatcgagcggctgcccgacgaggcgattgcacgc
tgcacgggcggactcttctgtccggcgcagcgcaagcaggcgctgtggcacttcgcgcag
cgccgcgcgctcgatatcgacggactcggcgagaagatcatcgatcagctggtcgagcag
aacctggtccgcacgccggccgatctgttcaatctcggctttgcgacgctcgcggagctc
gaccgcttcgccgataaatcggcgcagaacctgctcgactcgctcgaaaaggccaagcac
acgacgctcgcgcgttttatctacgcgctggggattcgccatgtcggcgaatcgaccgcg
aaggatctggcgaagcacttcggctcgctcgatccgatcatggatgcgtcgctcgaagcg
ctgctcgaagtcaacgacgtggggccggtcgtcgccgaatcgatccaccagttcttcgcc
gaggaccacaaccgcacggtaatcgagcaactgcgcgcgccgggcagagtcacgtggccc
gaggggccgcccgcgccgaaggcgcctcagggtgtgctggccggccagacggtcgtgctg
accggcacgctgccgaacctgtcgcgcgaggacgcgaaggaaatgctcgaagcggccggc
gcgaaggtggcggggtcggtatcgaagaaaaccagttacgtggtggcgggcgccgacgcg
ggcagcaaactcgcgaaggccgaggaactcggcatccccgtactcgacgaagatggtatg
cgcaagctcctggaggggcactga
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integrated database retrieval system
