Brevibacillus gelatini: AAFJ72_03305
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Entry
AAFJ72_03305 CDS
T11271
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgel Brevibacillus gelatini
Pathway
bgel03030
DNA replication
bgel03410
Base excision repair
bgel03420
Nucleotide excision repair
bgel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAFJ72_03305 (ligA)
03410 Base excision repair
AAFJ72_03305 (ligA)
03420 Nucleotide excision repair
AAFJ72_03305 (ligA)
03430 Mismatch repair
AAFJ72_03305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgel03032
]
AAFJ72_03305 (ligA)
03400 DNA repair and recombination proteins [BR:
bgel03400
]
AAFJ72_03305 (ligA)
Enzymes [BR:
bgel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AAFJ72_03305 (ligA)
DNA replication proteins [BR:
bgel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AAFJ72_03305 (ligA)
DNA repair and recombination proteins [BR:
bgel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AAFJ72_03305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAFJ72_03305 (ligA)
MMR (mismatch excision repair)
DNA ligase
AAFJ72_03305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AAFJ72_03305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
HHH_8
zf-IS66
Zn_ribbon_NUD
DUF763
Motif
Other DBs
NCBI-ProteinID:
XVN71327
LinkDB
All DBs
Position
624534..626540
Genome browser
AA seq
668 aa
AA seq
DB search
MDRLTAETKIKELAKRIERHNRLYYEEDRPEITDQEYDQLMRELIELETRFPELASPDSP
TQRVGGEPLPFFEKVVHKTPMLSLGNAFGEADIRDFDRRVRQAVGNQPVRYVAELKIDGL
AVSLHYENGMFVRGATRGDGTTGEDITQNLKTIRSIPLKLTRPLTLEVRGEAYMPKAAFE
KLNREREERGEPLFANPRNSAAGSLRQLDPKIAASRQLDTFIYSIGELQGETVESHSEGL
DLLESLGFKVNKERRVFDDIEELLAFIDSWTQKRPSLPYEIDGMVIKVDSYAQQEELGYT
AKSPRWAIAYKFPAEEAITILEGIEVSVGRTGSVTPTALLKPVSLAGTTVKRASLHNEDI
IREKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNETPFAMPTHCPECGSELVRLEEEVA
LRCINPMCPALIREGMIHFVSRAAMNIDGLGEKVVAQLYRDGIIHSVADLYYLHQKRDVL
LSMERMGEKSVDNLLAAIEASKQNSLERVLFGLGIRLVGAKAARVLAEHFGHIDAIMQAS
EEELTQINEIGPKMAASLINYFAQPQAQAVIERLKAAGVNMEYKGVRVEAGADLPFSGKT
IVLTGTLSQMSRQEAEEAIVRLGGKVTSSVSKKTDLVIAGEKAGSKLEKAEKLGVPVMDE
AGFLEILK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgattgacggcggaaacaaaaatcaaggaattggcgaaacgaattgaacggcat
aatcgtctttactatgaagaagatcggcctgagattaccgaccaggaatacgatcaattg
atgcgggagctgatcgagctggaaacccggttcccggagctggcttccccggattctcct
acccagcgcgtgggaggggagcctttgccattctttgaaaaggtcgtgcacaagacgccg
atgctcagtcttggcaacgcctttggcgaagcggatattagagatttcgaccgccgcgtc
cgccaggcagtaggcaaccagcctgtgcgctacgtggcggagctgaaaatcgatgggctg
gctgtttcccttcactacgaaaacgggatgtttgtccgcggagcgactcgcggagacggg
acgacaggcgaggacattacgcaaaacctgaaaacgatccgctcgattccgctcaaactg
accaggccgctgacattggaagtgcgcggcgaggcgtacatgcccaaggctgcttttgaa
aagctgaaccgggagcgggaagagcgcggggagccgctgtttgccaatccgcgcaactcg
gcggcaggctcactgcgccagctcgacccgaaaattgccgcctcccgtcagctcgacact
ttcatttacagcatcggcgagctgcaaggcgagactgtcgagtcccacagcgaggggctt
gacctgctcgaatcgcttggattcaaggtgaacaaggagcgccgcgtcttcgacgacatc
gaggagctgctcgcttttatcgacagctggacgcaaaagcgcccaagcctgccttacgaa
atcgacggcatggtcatcaaggtagacagctacgcacagcaggaggaactgggctacaca
gccaaaagcccgcgctgggcgattgcctacaagtttcctgcggaggaagcgatcacgatt
ctcgaaggcattgaagtgtcggtaggacgaaccgggagcgtgacaccgactgcccttttg
aagccggtcagtctggcgggcacgacggtcaagcgcgcttctttgcacaacgaggacatc
atccgggaaaaaggcttgctgattggcgaccacgtcgtcgtgaaaaaagcgggcgacatc
attcccgaaatcatagcagtgctgccggaacgccgaaccgggaacgagacgccgtttgcc
atgccgacgcattgtccggagtgcggcagcgagctggtgcggctggaggaagaggtcgcc
ttgcgctgcatcaatccgatgtgtccggcgctgatccgcgaaggcatgatccactttgtg
tcccgtgccgcgatgaacatcgacggactgggtgaaaaagtggtggcgcagctgtatcgc
gacggcatcattcacagcgtggcagacctgtactacctgcatcaaaagcgcgatgtcctg
ctttccatggagcgcatgggcgagaagtcggtagacaacctgctggcggcgattgaagcg
agcaagcaaaactcgctggaacgcgtactgttcggacttggcattcgcctggtcggagcc
aaggcagcgcgtgtgctggccgagcattttggccatatcgacgcgatcatgcaagcttcc
gaggaagagctgacgcaaattaacgagatcgggccgaaaatggcggcaagtctcatcaac
tacttcgcccagccgcaggcacaggcggttatcgagcggctcaaggcggccggagtgaac
atggagtacaaaggcgtgcgcgttgaagccggcgcagatttgccgttttccggaaagacg
atcgtcctcacaggaacgctttcgcaaatgtctcgtcaggaggcagaggaagcgattgtc
cgactgggcggcaaggtgacgagcagcgtcagcaaaaagaccgatttggtcattgcggga
gaaaaagccggctcgaagctggagaaggctgaaaaactgggcgttcctgtcatggacgaa
gccggatttttggagattctcaaataa
DBGET
integrated database retrieval system
