Bradyrhizobium genosp. P: ACP2YO_38030
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Entry
ACP2YO_38030 CDS
T11254
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgep Bradyrhizobium genosp. P
Pathway
bgep03030
DNA replication
bgep03410
Base excision repair
bgep03420
Nucleotide excision repair
bgep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACP2YO_38030 (ligA)
03410 Base excision repair
ACP2YO_38030 (ligA)
03420 Nucleotide excision repair
ACP2YO_38030 (ligA)
03430 Mismatch repair
ACP2YO_38030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgep03032
]
ACP2YO_38030 (ligA)
03400 DNA repair and recombination proteins [BR:
bgep03400
]
ACP2YO_38030 (ligA)
Enzymes [BR:
bgep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACP2YO_38030 (ligA)
DNA replication proteins [BR:
bgep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACP2YO_38030 (ligA)
DNA repair and recombination proteins [BR:
bgep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACP2YO_38030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACP2YO_38030 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACP2YO_38030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACP2YO_38030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
DUF4796_N
RUBY_RBDX
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
XRZ25825
LinkDB
All DBs
Position
complement(7912473..7914641)
Genome browser
AA seq
722 aa
AA seq
DB search
MATKAKKALVDIAKLTKAQAKVELTRLALEIEGHNERYYQKDAPTVSDAAYDALRQRLEA
IEARFPDLVAKDSPSQKVGAAPARGFAKVQHAVPMLSLGNAFADEDVTEFVDRIRRFLKL
DAEHIPALVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDIPHHLKGR
NIPAACELRGEVYMLKKDFLELNKKQAESDDTIFANPRNSAAGSLRQKDVSITASRPLKF
FAYTWGELSERPADTQHGMLAWMDKAGFTVNPLITLCKDVDEVLAFYRKIGEERATLGYD
IDGVVYKVDRLDWQDRLGFVSRSPRWAIAHKFAAEQATTILNGIDIQVGRTGALTPVARL
APVTVGGVVVQNATLHNEDYIKGIGNDGSPLRDGIDIRVGDTVVVQRAGDVIPQIVSVVL
DKRPKDANGYKFPPYKFPDTCPVCGSHAVREEDEVVRRCTGTLICPAQAVERLKHFVSRL
AFDIDGLGDKQIQEFYEDDLVKSPVDIFTLQKRDARSGSPLMQREGYGETSVRNLFSAID
ARRTIDLHRLIFALGIRHVGEGNAKLLARHYGSVENFREAMLAAAKGSKDEENTTEAYQD
LNNIGGIGEIVADAVVEFFAEPRNVKALGELLREIEVKPAEQPRKSSPVSDKTVVFTGSL
TKFTRDEAKAVAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARELGVAVLTEDEWLGLI
GE
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaaggcgaagaaagcgctggtcgacatcgccaagctcaccaaggcccaggcc
aaggtcgaactgacgcggctggcgctcgagatcgagggccacaacgagcgctattaccag
aaggatgctccgacggtgtcggatgcggcctatgacgcgctgcgtcagcggctagaggcg
atcgaggccaggtttccagatctcgttgcaaaagattcgccgtcgcaaaaagttggcgcc
gcgccggcgcgcggtttcgccaaggtgcagcatgctgttcccatgctgtcgctcggcaac
gcctttgccgacgaggatgtgaccgagtttgtcgatcgtatcagacgctttctcaagctc
gacgccgagcatattccggcgctcgtcgccgagccgaagatcgacgggctatcactgtca
ctgcgctacgagaacggcgaattggtccgcgcggcgacgcgcggcgatggctttaccggc
gaagacgtcaccgccaatgttcgtaccatcaaggacattccgcaccatttgaagggccgg
aatattccggcggcctgcgaactgcgcggcgaagtttacatgctcaagaaggattttctc
gagctgaacaagaagcaggccgaatccgacgacacgatctttgccaatccgcgcaattcg
gcggcgggatcgttgcgtcagaaagacgtctcgatcaccgcgtcgcggccgctgaagttt
tttgcctatacctggggcgagctcagcgagcggcctgccgatacccagcacggcatgctc
gcatggatggacaaagcaggctttaccgtcaatccgctgatcacgctgtgcaaggatgtc
gacgaggtcctggccttctaccgcaagatcggcgaagagcgcgccacgctcggctacgac
atcgacggtgtggtctacaaggtggatcgtctcgattggcaggatcgtctcgggttcgtg
tcgcgcagcccgcgctgggcgatcgcgcataaattcgcggccgagcaggcgacaaccatt
ctcaacggcatcgacatccaggtcggacgcaccggggcgctgacgccggtggcgcggctg
gcgccggtcacggtcggcggcgtggtggtgcagaacgcgacgctgcataacgaggattac
atcaagggtatcggtaacgacggcagcccgctccgcgatggcatcgatattcgcgtgggc
gacaccgtcgtcgtacagcgcgcaggcgacgtgattccacagatcgtcagcgtggtgctc
gacaagcggccgaaggatgccaatggttacaagttcccgccttacaagttcccggacacc
tgtcccgtctgcggcagccatgcggtgcgcgaggaagatgaggtggtgcgccgttgtacc
ggtaccttgatctgcccggcgcaggcggtggagcgattgaagcatttcgtttcgcgcctc
gccttcgacatcgatggcctcggcgacaagcagatccaggagttctacgaagacgatctc
gtgaagtcgccggtcgacatcttcacgctgcagaagcgcgatgcccgttccggcagtccg
ctgatgcagcgcgagggttacggcgaaacctcggtgcgcaatctgttcagtgcgatcgat
gcgcggcgcacgatcgatttgcatcgtctgatctttgcgctgggcatccgtcacgtcggc
gagggcaatgccaagcttctcgcgcggcactacggcagcgtcgagaatttccgtgaagcg
atgctggctgcggccaagggcagcaaggacgaagagaatacgaccgaggcctatcaggac
ctcaacaatatcggcggcatcggcgagatcgtcgccgacgccgtggtcgagttcttcgcc
gagccgcgcaacgtcaaggcgctcggcgagctgttgcgcgagatcgaggtgaagccggcc
gaacagccccgcaagagttcgccggtttcggacaagaccgtggtgtttacgggctcgctg
accaagttcacccgcgacgaagccaaggcggtggcggaacgtctcggcgccaaggtcgcc
ggctcggtgtcgaagaagacggattatgtcgtggccggcgaggacgccggctccaagctc
accaaggcgcgcgagctcggcgttgcggtgctgaccgaggacgagtggctgggattgatc
ggggagtga
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integrated database retrieval system
