Brachybacterium ginsengisoli: CFK41_07165
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Entry
CFK41_07165 CDS
T05099
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgg
Brachybacterium ginsengisoli
Pathway
bgg03030
DNA replication
bgg03410
Base excision repair
bgg03420
Nucleotide excision repair
bgg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFK41_07165
03410 Base excision repair
CFK41_07165
03420 Nucleotide excision repair
CFK41_07165
03430 Mismatch repair
CFK41_07165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgg03032
]
CFK41_07165
03400 DNA repair and recombination proteins [BR:
bgg03400
]
CFK41_07165
Enzymes [BR:
bgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFK41_07165
DNA replication proteins [BR:
bgg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFK41_07165
DNA repair and recombination proteins [BR:
bgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFK41_07165
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFK41_07165
MMR (mismatch excision repair)
DNA ligase
CFK41_07165
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFK41_07165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Amidohydro_2
HOOK
HHH
Motif
Other DBs
NCBI-ProteinID:
ATG54567
UniProt:
A0A291GWJ7
LinkDB
All DBs
Position
1617425..1619989
Genome browser
AA seq
854 aa
AA seq
DB search
MRHNDAVTTNEIPTADETAQQRIAELTAQIEQARVDYYEHDAPTLADAEYDQLEKELRAL
EEAHPQLAAEDSPTRTVGGAAAAGLPTIDHAERMQSLDNVFSLEELREWCAHAAAELGGS
ARYLTELKIDGLAINLRYEDGVLVTAATRGDGRTGEDVTVNALRIEGIPQRLSGDGHPPL
VEVRGEVFMPTADFERLNDLQVELRGRAVEESRKRWESRQASGRRAFDEQREQLAATRRF
PTFANPRNTAAGGLRQQLDKKDGLEREAGEARLAGLRLTVHGLGAWPDPPVDSQSEMYEL
LASWGLPTSRHLGVADTIDEVATYVEHHGEHRHDLEHEIDGIVVKVDAFAQQRALGSTSR
APRWAIAVKFPPEEVTTKLLDIQVQVGRTGRVTPFGVMEPVTVAGSTVEKATLHNQFDVE
RKGVLIGDTIVLRKAGDVIPEILGPVESLRDGSERPFVMPTACPACGTEIRPEKEGDKDW
RCPNQRDCPAQVTGRVEHAGSRGAFDIESLGEESAIALTDPDKRRPEALAALAEGHAVFL
PIRDLEDTEAEAFAVVKNGRVVEGTDGVPLLRITSAEDPLLPALQQPVIDTGADLFDLTS
EQLAEVVVWQPERRDGEPTGDWRIQPAFWTRAQFRHYKRESTWKQVKSPAALKTTEELLA
ELERKKDQPLWRVLVALSIRHVGPSAARSLATAYGTMDAIRAAGVEELAGTDGVGQIIAE
AVVEWFAVDWHREIVDGWAASGVRMADEVEEGFVKTLEGLTIVVTGGLDGFSRDGAKEAI
ISRGGKASGSVSKKTDFVVVGENAGSKETKARDLGLRILDEAGFVALLAGGADAIALPED
EADGTEGVEETAPE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtcacaatgatgcggtgacgacgaacgagatcccgacggccgacgagaccgcccag
cagcgcatcgcggagctcaccgcgcagatcgagcaggcccgcgtcgactactacgagcac
gacgcgcccaccctggccgatgccgagtacgaccagctcgagaaggagctgcgcgcgctc
gaggaggcccacccgcagctcgcggccgaggactcgcccacccgcaccgtgggcggtgca
gccgccgccggcctgcccacgatcgatcacgccgagcgcatgcagagcctggacaacgtc
ttctccctcgaggagctgcgcgagtggtgcgcccatgccgccgccgagctcggcgggagc
gcgcgctacctcaccgagctgaagatcgacggcctcgcgatcaacctccgctacgaggac
ggcgtgctggtcaccgccgcgacccgcggtgacggccgcaccggtgaggacgtcaccgtg
aacgccctgcgcatcgagggcatcccgcagcgcctctccggagacggccatccgccgctg
gtcgaggtgcgcggcgaggtgttcatgccgacggcggacttcgaacgcctcaacgacctc
caggtcgagctgcgcggtcgcgccgtcgaggagtcgcggaagcgctgggagtcccgtcag
gcgagcggccgccgcgccttcgacgagcagcgcgagcagctggccgccacccggcgcttc
cccaccttcgccaatccgcgcaacacggccgccggcggcctgcgtcagcagctggacaag
aaggacgggctggagcgggaggccggggaggcccgactcgccgggctgcgcctgaccgtc
cacggcctcggcgcctggcccgatcctccagtggactcccagagcgagatgtacgagctg
ctggcctcctggggtctgcccacgagccgccacctgggtgtcgcggacacgatcgacgag
gtcgccacgtacgtcgagcaccacggcgagcaccgccacgatctcgagcatgagatcgac
ggcatcgtcgtcaaggtcgacgccttcgcccagcagcgggcgctgggctccacctcccgc
gccccgcgctgggcgatcgcggtgaagttcccgcccgaggaggtgaccaccaagctgctg
gacatccaggtgcaggtgggccgcaccgggcgcgtcacccccttcggtgtgatggagccg
gtgaccgtcgccgggtccaccgtggagaaggcgaccctgcacaaccagttcgacgtggag
cgcaagggcgtgctgatcggggacaccatcgtgctgcgcaaggccggtgacgtgatcccg
gagatcctgggcccggtcgagtcgctgcgcgacggcagcgagcgccccttcgtgatgccg
accgcctgccccgcctgcgggacggagatccgccccgagaaggagggcgacaaggactgg
cgctgccccaaccagcgcgactgccctgcccaggtcaccggccgcgtcgagcatgccgga
tcgcgcggcgccttcgacatcgagtcgctcggggaggagagcgcgatcgcgctcaccgac
ccggacaagcgccgccccgaggccctggccgccctcgccgagggccatgccgtcttcctg
cccatccgggatctggaggacaccgaggcggaggccttcgcggtggtcaagaacggccgg
gtggtcgaggggaccgacggggtgccgctgctgcggatcacctcggccgaggatccgctg
ctccccgcgctccagcagcccgtgatcgacaccggcgcggacctcttcgacctcacctcg
gagcagctggccgaggtggtggtgtggcagcccgagcgccgcgacggcgagccgacgggg
gactggcgcatccagccggcgttctggacccgagcccagttccgccactacaagcgcgag
agcacctggaagcaggtgaagtccccggccgccctgaagaccaccgaggagctcctggct
gagctcgagcggaagaaggaccagccgctgtggcgcgtgctggtcgcgctctcgatccgc
cacgtgggcccgtcggcggcccgctccctcgcgaccgcctacggcaccatggacgcgatc
cgcgcggcaggcgtcgaggagctcgccgggaccgacggggtcggccagatcatcgccgag
gccgtcgtggagtggttcgccgtggactggcatcgcgagatcgtcgacggctgggccgcc
tccggcgtgcggatggccgacgaggtcgaggagggcttcgtcaagaccctcgagggcctc
acgatcgtcgtcaccggcgggctggacggattcagccgcgacggcgcgaaggaggcgatc
atctcccgcggcgggaaggcctccggctccgtctcgaagaagaccgacttcgtggtggtc
ggcgagaacgccggctcgaaggagaccaaggcccgggacctgggcctgcgcatcctcgac
gaggccgggttcgtggccctgctcgcgggcggcgccgacgcgatcgcccttccggaggac
gaggcggacggcacggagggtgtcgaggagactgcccccgagtga
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